Actinophage RP3
AttP
att site
Actinophage RP3 attachment site attP core region
experimental
agagcaccgctctcctaaagcgggtgtcgcaggttcgaatcctgccgggggcac
Bacillus phage B103
A1
promoter
Bacillus phage B103 A1 promoter
experimental
DNase1 footprinting
Primer extension
aactgtttaccatcttaaataccatatta
-35
TGTCAA
-10
ATTATA
Bacillus phage B103
TA1
terminator
Bacillus phage B103 rho-independent terminator TA1
experimental
tgcaccacagattgccactacggtgca
stem_1
GACACCACGT
stem_2
ACGTGGCATC
Bacillus phage B103
A2c
promoter
Bacillus phage B103 A2c promoter
experimental
DNase1 footprinting
Primer extension
aacttttaacaacttgtcgtactatatga
-35
TTTCAA
-10
AGTATA
Bacillus phage B103
A2b
promoter
Bacillus phage B103 A2b promoter
experimental
DNase1 footprinting
Primer extension
aacgtaaaacaattgtggtcaattttatta
-35
ATGCAA
-10
ATTATT
Bacillus phage B103
A3
promoter
Bacillus phage B103 A3 promoter
experimental
DNase1 footprinting
Primer extension
ATGAATACCAAGGGTTCCCGTGATATAAT
-10
TATAAT
Bacillus phage B103
TD1
terminator
Bacillus phage B103 rho-independent terminator TD1
experimental
CCTGCTGTTATAATAACGGCAGG
stem_1
CCTGCTGTTAT
stem_2
ATAACGGCAGG
Bacillus phage B103
TD1r
terminator
Bacillus phage B103 rho-independent terminator TD1
experimental
ggacggcaataatattgtcgtcc
stem_2
CCTGCTGTTAT
stem_1
ATAACGGCAGG
Bacillus phage B103
C1a
promoter
Bacillus phage B103 C1a promoter
experimental
DNase1 footprinting
Primer extension
aactgtttgtgtacgcctttgtccccatattt
-35
TGTCAA
-10
TTTATA
Bacillus phage B103
C2
promoter
Bacillus phage B103 C2 promoter
experimental
DNase1 footprinting
Primer extension
atctgttggtctgatattttacaatatga
-35
TGTCTA
-10
AGTATA
Bacillus phage GA-1
TA4
terminator
Bacteriophage GA-1 TA4 terminator
experimental
tttctcaggagtaaaactcccgaaaaa
stem_1
TGAGGACTCTTT
stem_2
AAAAAGCCCTCA
Bacillus phage GA-1
A1c
promoter
Bacteriophage GA-1 A1c promoter
experimental
Primer extension
aacatttactaaagtgatacactatattatttctatc
-35
TTACAA
-10
ATTATA
+1
C
Bacillus phage GA-1
TA3
terminator
Bacteriophage GA-1 TA3 terminator
experimental
tctctttccctgtgatctttatcacagaaaaagaaa
stem_1
TAGTGTCCCTTTCTCT
stem_2
AAAGAAAAAGACACTAT
Bacillus phage GA-1
A1b
promoter
Bacteriophage GA-1 A1b promoter
experimental
Primer extension
aactgaacctcaaatttattacgatattattataata
-35
AGTCAA
-10
ATTATA
+1
A
Bacillus phage GA-1
A1a
promoter
Bacteriophage GA-1 A1a promoter
experimental
Primer extension
aactgaagaaaaaataaagtatcatatgatctctatc
-35
AGTCAA
-10
AGTATA
+1
C
Bacillus phage GA-1
TA2
terminator
Bacteriophage GA-1 TA2 terminator
experimental
cttttcttcaactatcaaagataactgaagaaaaa
stem_1
CTATCAACTTCTTTTC
stem_2
AAAAAGAAGTCAATAG
Bacillus phage GA-1
TA1
terminator
Bacteriophage GA-1 TA1 terminator
experimental
ctccatgcaatagtggacacttttacccaaccactgcatgaaa
stem_1
TGATAACGTACCTC
stem_2
AAAGTACGTCACCA
Bacillus phage GA-1
A2c
promoter
Bacteriophage GA-1 A2c promoter
experimental
Primer extension
gatcgtaaattatttctcacacattttcttacac
-35
TGCTAG
-10
CTTTTA
+1
C
Bacillus phage GA-1
A2b
promoter
Bacteriophage GA-1 A2b promoter
experimental
Primer extension
aacacaaaaacaagatcaccacgataataaattaat
-35
ACACAA
-10
ATAATA
+1
T
Bacillus phage GA-1
A3
promoter
Bacteriophage GA-1 A3 promoter
experimental
Primer extension
TATAATTAATCTA
-10
TATAAT
+1
A
Bacillus phage GA-1
TD1
terminator
Bacteriophage GA-1 TD1 terminator
experimental
AAGACCGCCTTTAAAGGGCGGTTTT
stem_1
AAGACCGCCTTT
stem_2
AAAGGGCGGTTTT
Bacillus phage GA-1
TD1r
terminator
Bacteriophage GA-1 TD1 terminator
experimental
ttttggcgggaaatttccgccagaa
stem_1
AAAGGGCGGTTTT
stem_2
AAGACCGCCTTT
Bacillus phage GA-1
C1b
promoter
Bacteriophage GA-1 C1b promoter
experimental
Primer extension
aactgtcttctctttattatatcatatgatttctat
-10
AGTATA
-35
TGTCAA
+1
T
Bacillus phage GA-1
C2
promoter
Bacteriophage GA-1 C2 promoter
experimental
Primer extension
aactgagagtaacggttagatacaatatgatattaat
-10
AGTATA
-35
AGTCAA
+1
T
Bacillus phage Nf
A1
promoter
Bacillus phage Nf early promoter
experimental
TTGACATTTGATAGAATTTATGGTATAAT
-35
TTGACA
-10
TATAAT
Bacillus phage Nf
C1A
promoter
Bacillus phage Nf early promoter
experimental
TTGACAAACACATGCGGAAACAGGGATATAAA
-35
TTGACA
-10
TATAAA
Bacillus phage Nf
C2
promoter
Bacillus phage Nf early promoter
experimental
TAGACAACCAGACTATAAAATGTTATACT
-35
TAGACA
-10
TATACT
Bacillus phage Nf
A2c
promoter
Bacillus phage Nf early promoter
experimental
DNase1 footprinting
Promoter probe vectors
TTGAAAAATGTTGAACAGCATGATATACTAAAAGAG
-35
TTGAAA
-10
TATACT
+1
G
Bacillus phage Nf
A2b
promoter
Bacillus phage Nf early promoter
experimental
DNase1 footprinting
Promoter probe vectors
TTGCATTTTGTTTAACATCACCTTAGAATAATGAGTG
-35
TTGCATT
-10
TAGAAT
+1
G
Bacillus phage Nf
TA1
terminator
Bacillus phage Nf terminator of transcription
experimental
ACGTGGTGTCTAACGGTGATGCCACGT
stem_1
ACGTGGTGTC
stem_2
GATGCCACGT
Bacillus phage Nf
TD1
terminator
Bacillus phage Nf terminator of transcription
experimental
ACCTGCTGTTATAATAACGGC
Bacillus phage Nf
A3
promoter
Bacilllus phage Nf late promoter
experimental
DNase1 footprinting
Promoter probe vectors
TATAATAAAATAG
-10
TATAAT
+1
G
Bacillus phage phi105
pM
promoter
Bacteriophage phi105 pM promoter
experimental
Promoter probe vectors
S1 mapping
aacataaaggctgtaagcctatgatattaacacagt
-35
ATACAA
-10
ATTATA
+1
T
Bacillus phage phi105
oR
operator
Bacteriophage phi105 right operator region
experimental
GACGGAAATACAAGTATTTTTTAGTAAATTGACGGAAATACAAGATAAATACTCTCTGAATCTTTAAAATGCTTGAATTTCGTCAAATTTCGACTTTTACAAAATGTCGTGAATACCATACAATTTAGACATACCTTAACGGGAGGTGATAATCATGCTGGATGGGAAAAAGCTTAAGCTTGGGGCTTTAATTAAGGACAAAAGAAAAGAAAAGCACTTGAAACAGACAGAAATGGCGAAGGCACTGGGTATGTCCAGAACTTATCTCTCTGATATCGAAAACGGCAGATATCTGCCGAGTACAAAAACACTTTCCAGAATAGCGATTTTAATAAATCTGGATTTAAATGTGTTAAAAATGACGGAAATACAAG
O_1
GACGGAAATACAAG
O_2
GACGGAAATACAAG
O_3
GACGGAAATACAAG
Bacillus phage phi105
pR
promoter
Bacteriophage phi105 pR promoter
experimental
Promoter probe vectors
S1 mapping
TTTACAAAATGTCGTGAATACCATACAATTTAGACA
-35
TTTACA
-10
TACAAT
+1
A
Bacillus phage phi29
A1
promoter
Bacteriophage phi-29 A1 promoter
experimental
Primer extension
S1 mapping
aactgttgataatgtctcatacgatattaccatcat
-35
TGTCAA
-10
ATTATA
+1
T
Bacillus phage phi29
A1 IV
promoter
Bacteriophage phi-29 A1 IV promoter
experimental
Primer extension
S1 mapping
aactatatacaaatccgatgtttccctttgcattctat
-35
TATCAA
+1
T
Bacillus phage phi29
TA1
terminator
Bacteriophage phi29 TA1 terminator
experimental
tgcaccgtagattgtggctacagtgca
stem_1
GATGCCACGT
stem_2
ACGTGACATC
Bacillus phage phi29
A2c
promoter
Bacteriophage phi-29 A2c promoter
experimental
Primer extension
S1 mapping
aacttttaacagcttgtcccactatattattttctc
-35
TTTCAA
-10
ATTATA
+1
C
Bacillus phage phi29
A2b
promoter
Bacteriophage phi-29 A2b promoter
experimental
Primer extension
S1 mapping
aacgtttttcaatatgtccacaccaatttatctcttgc
-35
TTGCAA
-10
ATTTAA
+1
C
Bacillus phage phi29
A3
promoter
Bacteriophage phi-29 A3 promoter
experimental
Primer extension
S1 mapping
GTATCAAGGGTTCACGTGGTATAATTAAGTAG
-10
TATAAT
+1
G
Bacillus phage phi29
A2a
promoter
Bacteriophage phi-29 A2a promoter
experimental
Primer extension
S1 mapping
taccgtatacaaagtggagaaagatattagataatcatg
-35
TGCCAT
-10
ATTATA
+1
G
Bacillus phage phi29
B1
promoter
Bacteriophage phi-29 B1 promoter
experimental
Primer extension
S1 mapping
aacaagtaaaagaggttattacaatttgaaagtagt
-35
GAACAA
-10
AGTTTA
+1
T
Bacillus phage phi29
B2
promoter
Bacteriophage phi-29 B2 promoter
experimental
Primer extension
S1 mapping
atgtgtgtttcggcatatttggcacatattatccccatt
-35
TGTGTA
-10
ATTATA
+1
T
Bacillus phage phi29
TD1
terminator
Bacteriophage phi29 TD1 terminator
experimental
AGCCTATCGTCTGAGGAACGGTAGGCT
stem_1
AGCCTATCGTC
stem_2
GAACGGTAGGCT
Bacillus phage phi29
TD1r
terminator
Bacteriophage phi29 TD1 terminator
experimental
tcggatggcaaggagtctgctatccga
stem_1
AGCCTATCGTC
stem_2
GAACGGTAGGCT
Bacillus phage phi29
C1
promoter
Bacteriophage phi-29 C1promoter
experimental
Primer extension
S1 mapping
aaatgtttcacttgtccttcacaatttgatatatct
-35
TGTAAA
-10
AGTTTA
+1
T
Bacillus phage phi29
C2
promoter
Bacteriophage phi-29 C2 promoter
experimental
Primer extension
S1 mapping
atctgtttgatagcaaattgtacaatatgatattatc
-35
TGTCTA
-10
AGTATA
+1
C
Enterobacteria phage 933W
pL
promoter
933W phage pL promoter
experimental
DNase1 footprinting
EMSA - gel shift
Primer extension
aactattacagcttgataaccaagtaataatagcagc
-35
TTATCAA
-10
ATAATG
+1
C
Enterobacteria phage 933W
OL
operator
933W phage OL region
experimental
ATGAACCAATAGTTCGACATTATCAAGAACTATTGGTACG
O_1
ATGAACCAATAGTTCG
O_2
AAGAACTATTGGTACG
Enterobacteria phage 933W
OR
operator
933W phage OR operator
experimental
TGAACCATGAGTACGATACTAAAGCACTTGCAAAAACTTTCAGTTCAACCATAATACGTACTGAAAGTACG
O_1
CGTACTGAAAGTACG
O_2
AAAACTTTCAGTTCA
O_3
TGAACCATGAGTACG
Enterobacteria phage 933W
pRM
promoter
933W phage pRM promoter
experimental
DNase1 footprinting
EMSA - gel shift
Primer extension
actttcaaaaacgttcacgaaatcatagcatgagt
-35
CTTTCA
-10
ATACTA
+1
T
Enterobacteria phage 933W
pR
promoter
933W phage pR promoter
experimental
DNase1 footprinting
EMSA - gel shift
Primer extension
TTGCAAAAACTTTCAGTTCAACCATAATACGTACTGA
-35
TTGCAA
-10
CATAAT
+1
A
Enterobacteria phage HK022
pL
promoter
Enterobacteria phage HK022 left promoter
experimental
Linker scanning mutations
Primer extension
Promoter probe vectors
aaatgtaattacttgaaattcatgtagtattcgggt
-35
TGTAAA
-10
ATGATG
+1
T
Enterobacteria phage HK022
oL
operator
Enterobacteria phage HK022 left operator
experimental
TGTACTTAAAGTTCATTAATGTAAAGTACCAATAGTACATTTTATGGGTATAAAAAGCTCACTACATCATAAGTTAGTGAACTTTAAGGAA
O_1
TGTACTTAAAGTTCA
O_2
AGTACCAATAGTACA
O_3
TGAACTTTAAGGAA
Enterobacteria phage HK022
oR
operator
Enterobacteria phage HK022 right operator
experimental
TGAACCATAAGTTCAACTATATTAGGTATTGACTGTACTATCAGTTCCGTCATAATATGAACCATAAGTTCA
O_1
TGAACCATAAGTTCA
O_2
TGTACTATCAGTTCC
O_3
TGAACCATAAGTTCA
Enterobacteria phage HK022
pRM
promoter
Enterobacteria phage HK022 pRM promoter
experimental
Linker scanning mutations
Primer extension
Promoter probe vectors
atatcaacttgaat
+1
T
-10
ACTATA
Enterobacteria phage HK022
pR
promoter
Enterobacteria phage HK022 right promoter
experimental
Linker scanning mutations
Primer extension
Promoter probe vectors
TTGACTGTACTATCAGTTCCGTCATAATATGAACCA
-35
TTGACT
-10
CATAAT
+1
A
+1
AA
Enterobacteria phage lambda
tI
terminator
Lambda phage rho-independent tI terminator
experimental
N/A
taatcgcgttccactaaaaacagaagaacgcgatta
stem_1
ATTAGCGCAAG
stem_2
CTTGCGCTAAT
Enterobacteria phage lambda
attP
att site
Enterobacteria phage lambda attachment site
experimental
TACGTTTCTCGTTCAGCTTTTTTATACTAAGTTGGCATTATAAAAAA
Enterobacteria phage lambda
PI
promoter
Lambda phage pI promoter
experimental
Primer extension
aacgcacattaacgcctctgaaacgctacatga
-35
GCAATTACACGCAA
-10
AGTACA
Enterobacteria phage lambda
tL3
terminator
Lambda phage rho-independent tL3 terminator
experimental
tccgacccataaagggccgga
stem_1
CCCAGCCT
stem_2
AGGCCGGG
Enterobacteria phage lambda
tL2
terminator
Lambda phage rho-independent tL2 terminator
experimental
cgggaggtcacactcccg
stem_1
GAGGGC
stem_2
GCCCTC
Enterobacteria phage lambda
PsieB
promoter
Promoter of superinfection exclusion gene (sieB)
experimental
Linker scanning mutations
RNase protection assay
TGTACCCCTACAGCGAGAAATCGGATAAACT
-35
TGTACC
-10
TAAACT
Enterobacteria phage lambda
tL1
terminator
Phage lambda rho-dependent tL1 terminator
experimental
caatagacccgaattttcgtcttcaggttgggtctattg
stem_1
TTTAAGCCCAGATAAC
stem_2
GTTATCTGGGTTGGA
Enterobacteria phage lambda
PL1
promoter
Lambda phage left L1 promoter
experimental
EMSA - gel shift
Promoter probe vectors
aactgtatttatggtgaccgccactatgactcgtgt
-35
TGTCAA
-10
AGTATC
+1
T
Enterobacteria phage lambda
OL
operator
Lambda phage left operator region
experimental
TATCACCGCCAGTGGTATTTATGTCAACACCGCCAGAGATAATTTATCACCGCAGATGGTT
O_1
TATCACCGCCAGTGGTA
O_2
CAACACCGCCAGAGATA
O_3
TATCACCGCAGATGGTT
Enterobacteria phage lambda
PL2
promoter
Lambda phage left L2 promoter
experimental
EMSA - gel shift
Promoter probe vectors
atgtctattggtagacgccactatttaatagagac
-35
TCTGTA
-10
AATTTA
+1
C
Enterobacteria phage lambda
PRM
promoter
Lambda phage pRM promoter
experimental
DNase1 footprinting
EMSA - gel shift
Promoter probe vectors
atctataaatagggaacgccactatctaaattgcat
-35
TATCTA
-10
AATCTA
+1
T
Enterobacteria phage lambda
OR
operator
Lambda phage right operator region
experimental
TATCACCGCAAGGGATAAATATCTAACACCGTGCGTGTTGACTATTTTACCTCTGGCGGTGATA
O_3
TATCACCGCAAGGGATA
O_2
TAACACCGTGCGTGTTG
O_1
TACCTCTGGCGGTGATA
Enterobacteria phage lambda
PR
promoter
Lambda phage right pR promoter
experimental
DNase1 footprinting
EMSA - gel shift
Promoter probe vectors
TTGACTATTTTACCTCTGGCGGTGATAATGGTTGCA
-35
TTGACTA
-10
GATAAT
+1
A
Enterobacteria phage lambda
tR1
terminator
Lambda phage rho-dependent tR1 terminator
experimental
TGTATGCATTTATTTGCATACA
stem_1
TGTATGCA
stem_2
TGCATACA
Enterobacteria phage lambda
PRE
promoter
Lambda phage pRE promoter
experimental
DNase1 footprinting
Linker scanning mutations
caaacaaacgtgcttggtatacattcataaaggaat
-35
ACAAAC
-10
ATACTT
+1
T
Enterobacteria phage lambda
tO
terminator
Transcriptional terminator of OOP anti-sense RNA
experimental
tcttgcgagccaacggcggcccgcaaaa
stem_1
ACCGAGCGTTCT
stem_2
AAAACGCCCGGC
Enterobacteria phage lambda
POop
promoter
Promoter of RNA OOP (anti-sense RNA to cII RNA)
experimental
Promoter probe vectors
gtatta
-10
ATTATG
Enterobacteria phage lambda
tR2
terminator
Lambda phage rho-independent tR2 temrinator
experimental
AGGCCTGCTGGTAATCGCAGGCCT
stem_1
AGGCCTGC
stem_2
GCAGGCCT
Enterobacteria phage lambda
PaQ
promoter
Lambda phage Paq promoter
experimental
Linker scanning mutations
ctcgtgaacgtcatggaaacggaatcataaaggaagtt
-35
GTGCTC
-10
ATACTA
+1
T
Enterobacteria phage lambda
PR'
promoter
Lambda phage pR' promoter
experimental
Promoter probe vectors
TTGACTTATTGAATAAAATTGGGTAAATTTGACTCAA
-35
TTGACT
-10
TAAATT
+1
A
Enterobacteria phage lambda
tR'
terminator
Lambda phage rho-independent tR' terminator
experimental
N/A
CCCGAAACAGTTCGCAGGTAATAGTTAGAGCCTGCATAACGGTTTCGGG
stem_1
CCCGAAACAGTTCGCAGG
stem_2
CCTGCATAACGGTTTCGGG
Enterobacteria phage Mu
O1
operator
Mu phage operator O1
experimental
CTTTTCAGTATTATTCTTTTCTATAAAGTTACTTTTCAAAA
O_1
CTTTTCAGTA
O_2
CTTTTCTATA
O_3
CTTTTCAAAA
Enterobacteria phage Mu
O2
operator
Mu phage operator O2
experimental
TACCAAAAAGCAGCTTTACAAAAAGCTTTTCAGTAATTATCTTTTTAGTAA
O_1
aaaaaccat
O_2
aaaaacattt
O_3
CTTTTCAGTAA
O_4
CTTTTTAGTAA
Enterobacteria phage Mu
pE
promoter
Mu phage early promoter for transposase and replication
experimental
DNase1 footprinting
S1 mapping
TTTACAAAAAGCTTTTCAGTAATTATCTTTTTAGTA
-35
TTTACA
-10
TATCTT
+1
A
Enterobacteria phage Mu
O3
operator
Mu phage operator O3
experimental
CTTAGTTAAATTGCTAACTTTATAGAT
O_1
CTTAGTTAAA
O_2
CTTTATAGAT
Enterobacteria phage Mu
pCM
promoter
Mu phage promoter of repressor gene
experimental
DNase1 footprinting
S1 mapping
aaatttttgggaggattcaaaacattagatattt
-35
TTTAAA
-10
ATTACA
+1
T
Enterobacteria phage Mu
pGEM
promoter
Mu phage promoter of the gem operon
experimental
Primer extension
TTATTTTCCATAAAATCCTCTCTGATTGATGTGTAAATTCAGGCGGTGTTGCAGCACCGCCCCCTTTC
-35
TAAAAT
-10
TAAATT
+1
C
Enterobacteria phage Mu
t9.2
terminator
Mu phage transcriptional terminator of early genes
experimental
AAAGCCGGTTAATCCGGCTTT
stem_1
AAAGCCGG
stem_2
CCGGCTTT
Enterobacteria phage Mu
pM
promoter
Mu phage middle promoter
experimental
DNase1 footprinting
Linker scanning mutations
Promoter probe vectors
S1 mapping
TCCGGCTTTTTTTACGTCCTCAATATCCTGTGATGAA
-35
TCCGGC
-10
TATCCT
+1
A
Enterobacteria phage Mu
tM
terminator
Mu phage transcriptional terminator of middle operon
experimental
AAATAACCGGCATCCTGCCGGTTATTT
stem_1
AAATAACCGGC
stem_2
GCCGGTTATTT
Enterobacteria phage Mu
pLyz
promoter
Mu phage promoter of late genes
experimental
Promoter probe vectors
S1 mapping
CCATAATCCCGCACCTGCCACCTGATTTTTTAGACTGCCATCAG
-35
CCATAATCCCGCAC
-10
TAGACT
+1
AG
Enterobacteria phage Mu
tLys(a)
terminator
Mu phage transcriptional terminator of late genes
experimental
TAAACCGGTATTTAACGGTGTATGAATCCCGTTTTA
stem_1
TAAACCGGTATTTA
stem_2
TGAATCCCGTTTTA
Enterobacteria phage Mu
tLys(b)
terminator
Mu phage transcriptional terminator of late genes
experimental
AACGGTGTATGAATCCCGTT
stem_1
AACGG
stem_2
CCGTT
Enterobacteria phage Mu
pI
promoter
Mu phage promoter of late genes
experimental
Promoter probe vectors
S1 mapping
GCATAACCCCAGATTTTCCCGCACCTCCCGCAAACTGACTGCTCA
-35
GCATAACCCCAGAT
-10
CAAACT
+1
GCTC
Enterobacteria phage Mu
pP
promoter
Mu phage promoter of late genes
experimental
Promoter probe vectors
S1 mapping
CCATAACCCCGGACGGCGGCTTTTCACAGGTATCCTTTTCAGACA
-35
CCATAACCCCGGAC
-10
TATCCT
+1
A
+1
A
Enterobacteria phage Mu
tP(G+)
terminator
Mu phage transcriptional terminator in G segment
experimental
AAGGCCCGATAGCGGGCCTT
stem_1
AAGGCCCG
stem_2
CGGGCCTT
Enterobacteria phage Mu
tP(G-)
terminator
Mu phage transcriptional terminator in G segment
experimental
ttccgggcgatagcccggaa
stem_1
AAGGCCCG
stem_2
CGGGCCTT
Enterobacteria phage Mu
pMom
promoter
Mu phage promoter of late genes
experimental
Promoter probe vectors
S1 mapping
CAATAACCACACTCAACCCATGATGTTTTTTAAGATAGTGGCGA
-35
CAATAACCACACTC
-10
TAAGAT
+1
GA
Enterobacteria phage Mu
tMom
terminator
Mu phage transcriptional terminator of mom operon
experimental
AAGCGCGAAAGCTAAAGTTTTCGCATTT
stem_1
AAGCGCGAAAGC
stem_2
GTTTTCGCATTT
Enterobacteria phage P1
p2Coi
promoter
Enterobacteria phage P1 sigma 70 promoter
predicted
aacttgacatacctaaatgtccatttaa
-35
GTTCAA
-10
AATTTA
Enterobacteria phage P1
p3Cre
promoter
Enterobacteria phage P1 sigma 70 promoter
experimental
Primer extension
Promoter probe vectors
TTGATCAAGGTTGCGCTACGTAAAAT
-35
TTGATC
-10
TAAAAT
Enterobacteria phage P1
p2Cre
promoter
Enterobacteria phage P1 sigma 70 promoter
experimental
Primer extension
Promoter probe vectors
TTGATCGTGATAGTTGCCAACTGTCATTAT
-35
TTGATC
-10
CATTAT
Enterobacteria phage P1
p1Cre
promoter
Enterobacteria phage P1 sigma 70 promoter
experimental
Primer extension
Promoter probe vectors
TGTACACTTTACTTAAAACCATTAT
-35
TGTACA
-10
CATTAT
Enterobacteria phage P1
pC8
promoter
Enterobacteria phage P1 sigma 70 promoter
predicted
TTGTCATGAACTATATCCGTAACCTGGATAGT
-35
TTGTCA
-10
GATAGT
Enterobacteria phage P1
tAsRef
terminator
Rho-independent transcriptional terminator
predicted
cggaccgaggaacggtccg
stem_1
GCCAGGC
stem_2
GCCTGGC
Enterobacteria phage P1
p2Ref
promoter
Enterobacteria phage P1 sigma 70 promoter
predicted
CTATCATTGCTCTAATTGATTGCTATAAT
-35
CTATCA
-10
TATAAT
Enterobacteria phage P1
oRef
operator
C1-controlled operator of P1 phage
experimental
ATTGCTCTAATTGATTG
Enterobacteria phage P1
p1Ref
promoter
Enterobacteria phage P1 sigma 70 promoter
predicted
TTGCCATTACTTCACTCCTTGACATCAT
-35
TTGCCA
-10
CATCAT
Enterobacteria phage P1
tC8
terminator
Rho-independent transcriptional terminator
predicted
GGCGGCCATTAGGCCGCC
stem_1
GGCGGCC
stem_2
GGCCGCC
Enterobacteria phage P1
oMat
operator
C1-controlled operator of P1 phage
experimental
CATGCACTAATAAATAT
Enterobacteria phage P1
pMat
promoter
Enterobacteria phage P1 sigma 70 promoter
predicted
TTGACAACTGACAAGTGACTTCAGTCAGAAT
-35
TTGACA
-10
CAGAAT
Enterobacteria phage P1
LpMat
promoter
Enterobacteria phage P1 late promoter
experimental
Linker scanning mutations
AAGTGACTTCAGTCAGAAT
-10
CAGAAT
Enterobacteria phage P1
tRef
terminator
Rho-independent transcriptional terminator
predicted
GCCGCCGCTGGTGGC
stem_1
GCCGCC
stem_2
GGTGGC
Enterobacteria phage P1
p1Res
promoter
Enterobacteria phage P1 sigma 70 promoter
predicted
aacggggtttgtttcagcacaaaatacca
-35
GGGCAA
-10
ACCATA
Enterobacteria phage P1
p2Res
promoter
Enterobacteria phage P1 sigma 70 promoter
experimental
aatttttttcgtgttggtgttcactatta
-35
TTTTAA
-10
ATTATC
Enterobacteria phage P1
p3Res
promoter
Enterobacteria phage P1 sigma 70 promoter
experimental
aactttattgttttttttcctatgtcc
-35
TTTCAA
-10
CCTGTA
Enterobacteria phage P1
p1Mod
promoter
Enterobacteria phage P1 sigma 70 promoter
experimental
cactatcacggtgttgaagaccgagattg
-35
TATCAC
-10
GTTAGA
Enterobacteria phage P1
p2Mod
promoter
Enterobacteria phage P1 sigma 70 promoter
experimental
tacgtaacgaagagttacgcctaatttga
-35
ATGCAT
-10
AGTTTA
Enterobacteria phage P1
p1Lxc
promoter
Enterobacteria phage P1 sigma 70 promoter
experimental
gacttcttcaactgctggtcctgatactc
-35
CTTCAG
-10
CTCATA
Enterobacteria phage P1
p2Lxc
promoter
Enterobacteria phage P1 sigma 70 promoter
experimental
aataatgacctcgcgccaataccattaaa
-35
TAATAA
-10
AAATTA
Enterobacteria phage P1
p3Lxc
promoter
Enterobacteria phage P1 sigma 70 promoter
experimental
aactccgccatgacgcatgccgtaaca
-35
CCTCAA
-10
ACAATG
Enterobacteria phage P1
LpPro
promoter
Enterobacteria phage P1 late promoter
predicted
AAGTGACTAGTGTTAAATT
-10
TAAATT
Enterobacteria phage P1
pDarB
promoter
Enterobacteria phage P1 sigma 70 promoter
predicted
aacagacggttctaacgtggaattaatctta
-35
AGACAA
-10
ATTCTA
Enterobacteria phage P1
tAsPro
terminator
Rho-independent transcriptional terminator
predicted
gcggtcaaggacaccgc
stem_1
TGGCG
stem_2
CGCCA
Enterobacteria phage P1
tPro
terminator
Rho-independent transcriptional terminator
predicted
CCCCGGCAGCTGCCGGGG
stem_1
CCCCGGC
stem_2
GCCGGGG
Enterobacteria phage P1
tLyz
terminator
Rho-independent transcriptional terminator
predicted
ggggccgtcgacggcccc
stem_1
GCCGGGG
stem_2
CCCCGGC
Enterobacteria phage P1
tAsLyz
terminator
Rho-independent transcriptional terminator
predicted
CCGCCTCCTGCGG
stem_1
CCGC
stem_2
GCGG
Enterobacteria phage P1
LpLyz
promoter
Enterobacteria phage P1 late promoter
experimental
Primer extension
ttcactaaacgtaataggacacagaa
-10
AGGATA
+1
A
Enterobacteria phage P1
p2Ssb
promoter
Enterobacteria phage P1 sigma 70 promoter
experimental
Promoter probe vectors
TTGTTAGCTACGTTTCAAAGATATACATTATTGCTC
-35
TTGTTA
-10
TACATT
+1
C
Enterobacteria phage P1
oSsb
operator
C1-controlled operator of P1 phage
experimental
ATTGCTCTAATTAATTT
Enterobacteria phage P1
p1Ssb
promoter
Enterobacteria phage P1 sigma 70 promoter
predicted
TCTAATTAATTTATTTTATTAGGTAAGAT
-35
TCTAAT
-10
TAAGAT
Enterobacteria phage P1
pLyz
promoter
Enterobacteria phage P1 sigma 70 promoter
predicted
aaatgtggcgcaacacggtgaatagaa
-35
TGTAAA
-10
AAGATA
Enterobacteria phage P1
tInsB
terminator
Rho-independent transcriptional terminator
predicted
cccacgagagaccgtggg
stem_1
GCACCC
stem_2
GGGTGC
Enterobacteria phage P1
pIsaB
promoter
Enterobacteria phage P1 sigma 70 promoter
predicted
TAGACAAGCAAGATAGGGCGAATTAAAAT
-35
TAGACA
-10
TAAAAT
Enterobacteria phage P1
pInsA
promoter
Enterobacteria phage P1 sigma 70 promoter
predicted
aactaattaaaattaagcgggatagaa
-35
AATCAA
-10
AAGATA
Enterobacteria phage P1
tAsDdrB
terminator
Rho-independent transcriptional terminator
predicted
CCCGCCCGAAATCGGGCAGG
stem_1
CCCGCCCG
stem_2
CGGGCAGG
Enterobacteria phage P1
tDdrA
terminator
Rho-independent transcriptional terminator
predicted
ggacgggctaaagcccgccc
stem_1
CGGGCAGG
stem_2
CCCGCCCG
Enterobacteria phage P1
tAsDdrA
terminator
Rho-independent transcriptional terminator
predicted
TTTTGGCACACCATCATGTTCCGAAG
stem_1
TTTTGGCACA
stem_2
TGTTCCGAAG
Enterobacteria phage P1
LpDarA
promoter
Enterobacteria phage P1 late promoter
experimental
Primer extension
Promoter probe vectors
ttcaatgaaacgtatggtaatggaggac
-10
ATGGTA
+1
C
Enterobacteria phage P1
tpLydC
terminator
Rho-independent transcriptional terminator
predicted
acgaggagaggtaggaaccgccccacgt
stem_1
TGGAGAGGAGCA
stem_2
TGCACCCCGCCA
Enterobacteria phage P1
p2Cin
promoter
Enterobacteria phage P1 sigma 70 promoter
predicted
TTTCCTTAATAGTGAATTAAATATCAT
-35
TTTCCT
-10
TATCAT
Enterobacteria phage P1
p1Cin
promoter
Enterobacteria phage P1 sigma 70 promoter
predicted
TTTCCACACATACTGGTTTTTGTTAATTAAAAT
-35
TTTCCA
-10
TAAAAT
Enterobacteria phage P1
pLydC
promoter
Enterobacteria phage P1 sigma 70 promoter
predicted
aactatgcgcatgtatcggataatcgta
-35
TATCAA
-10
ATGCTA
Enterobacteria phage P1
tU
terminator
Rho-independent transcriptional terminator
predicted
GGCCCGATAGCGGGCC
stem_1
GGCCCG
stem_2
CGGGCC
Enterobacteria phage P1
LpS
promoter
Enterobacteria phage P1 late promoter
experimental
Primer extension
Promoter probe vectors
ttcaatgaatagaatgttactccgaag
-10
ATTGTA
+1
G
Enterobacteria phage P1
t2SimC
terminator
Rho-independent transcriptional terminator
predicted
gagcatcttagccaattgtgtggtctaagatgctc
stem_1
GATTCTACGAG
stem_2
CTCGTAGAATC
Enterobacteria phage P1
LpSit
promoter
Enterobacteria phage P1 late promoter
experimental
Primer extension
tttactgatgagcatctta
-10
ATTCTA
Enterobacteria phage P1
t1SimC
terminator
Rho-independent transcriptional terminator
predicted
gcgggtaatttcccgc
stem_1
GGGCG
stem_2
CGCCC
Enterobacteria phage P1
p1PmgC
promoter
Enterobacteria phage P1 sigma 70 promoter
predicted
aactttcctatcagttaaattcaaaattg
-35
TTTCAA
-10
GTTAAA
Enterobacteria phage P1
p2PmgC
promoter
Enterobacteria phage P1 sigma 70 promoter
predicted
aactacattaccttcctaaactatcgta
-35
CATCAA
-10
ATGCTA
Enterobacteria phage P1
p3PmgC
promoter
Enterobacteria phage P1 sigma 70 promoter
predicted
aagtgtttagttctaggacaagtctacta
-35
TGTGAA
-10
ATCATC
Enterobacteria phage P1
pSimB
promoter
Enterobacteria phage P1 sigma 70 promoter
predicted
tactcaatattccgtccactccaatatta
-35
ACTCAT
-10
ATTATA
Enterobacteria phage P1
pSimA
promoter
Enterobacteria phage P1 sigma 70 promoter
predicted
aaattatttatgtgtcaacctagatta
-35
ATTAAA
-10
ATTAGA
Enterobacteria phage P1
oC4
operator
C1-controlled operator of P1 phage
experimental
AATGCTCTAATAAATTT
Enterobacteria phage P1
p2C4
promoter
Enterobacteria phage P1 sigma 70 promoter
experimental
Promoter probe vectors
TTGTATTTTTAAGTCGCGAATGCTATCTT
-35
TTGTAT
-10
TATCTT
Enterobacteria phage P1
p1C4
promoter
Enterobacteria phage P1 sigma 70 promoter
experimental
Promoter probe vectors
TTGACCTTTTAATCGTTCAGGCTTATAGT
-35
TTGACC
-10
TATAGT
Enterobacteria phage P1
tAsKilA
terminator
Rho-independent transcriptional terminator
predicted
ggacggtcaaacgaccgtcc
stem_1
CTGGCAGG
stem_2
CCTGCCAG
Enterobacteria phage P1
pKilA
promoter
Enterobacteria phage P1 sigma 70 promoter
experimental
DNase1 footprinting
Linker scanning mutations
TGGATCGGGTCAGAAAAATTTGCTCTAATAAATTTCG
-35
TGGATC
-10
TCTAAT
+1
G
Enterobacteria phage P1
oKilA
operator
C1-controlled operator of P1 phage
experimental
TTTGCTCTAATAAATTT
Enterobacteria phage P1
PAskilA
promoter
Enterobacteria phage P1 sigma 70 promoter
experimental
Primer extension
Promoter probe vectors
agctgtaaaactacttccaaactatataagtataggc
-35
TGTCGA
-10
AATATA
+1
C
Enterobacteria phage P1
pRepL
promoter
Enterobacteria phage P1 sigma 70 promoter
predicted
TTCACCTGGTTGCGTGATAACGGAATTCT
-35
TTCACC
-10
AATTCT
Enterobacteria phage P1
oRlf
operator
C1-controlled operator of P1 phage
experimental
ATTGCTCTAATTATAAC
Enterobacteria phage P1
pRlfA
promoter
Enterobacteria phage P1 sigma 70 promoter
predicted
TTGCAATTAATAAACAACTAACGGACAAT
-35
TTGCAA
-10
GACAAT
Enterobacteria phage P1
p1RlfB
promoter
Enterobacteria phage P1 sigma 70 promoter
predicted
TAGAGACATCAAGGAATTAAAATTAAAAC
-35
TAGAGA
-10
TAAAAC
Enterobacteria phage P1
p2RlfB
promoter
Enterobacteria phage P1 sigma 70 promoter
predicted
CTGATTTCGAAATCAAGTGGACTAAAGT
-35
CTGATT
-10
TAAAGT
Enterobacteria phage P1
p3RlfB
promoter
Enterobacteria phage P1 sigma 70 promoter
predicted
TTGAATTTTACTTAGATGTCGTAGATT
-35
TTGAAT
-10
TAGATT
Enterobacteria phage P1
p4RlfB
promoter
Enterobacteria phage P1 sigma 70 promoter
predicted
TTGAGAAATTAAGAGGGGTTCTTCACAATGA
-35
TTGAGA
-10
CAATGA
Enterobacteria phage P1
pAsrlf
promoter
Enterobacteria phage P1 sigma 70 promoter
predicted
aacttttcgatttcatctagccaatctaa
-35
TTTCAA
-10
AATCTA
Enterobacteria phage P1
tPmgG
terminator
Rho-independent transcriptional terminator
predicted
cgaggaagccctcg
stem_1
GGAGC
stem_2
GCTCC
Enterobacteria phage P1
p1PmgF
promoter
Enterobacteria phage P1 sigma 70 promoter
predicted
aactcaccctaattctcagtagggaacataaaa
-35
ACTCAA
-10
AAAATA
Enterobacteria phage P1
p2PmgF
promoter
Enterobacteria phage P1 sigma 70 promoter
predicted
aactttacaacctgacgttttagatgtca
-35
TTTCAA
-10
ACTGTA
Enterobacteria phage P1
t22
terminator
Rho-independent transcriptional term
predicted
ccggccccttgaggccgg
stem_1
CCGGCC
stem_2
GGCCGG
Enterobacteria phage P1
tAs23
terminator
Rho-independent transcriptional terminator
predicted
CCCGCAAAAACCGGG
stem_1
CCCG
stem_2
CGGG
Enterobacteria phage P1
Lp23
promoter
Enterobacteria phage P1 late promoter
predicted
ttcactgaaagttatttta
-10
ATTTTA
Enterobacteria phage P1
p123
promoter
Enterobacteria phage P1 sigma 70 promoter
predicted
aacagtgctctttcagttgttcactgaaagtta
-35
TGACAA
-10
ATTGAA
Enterobacteria phage P1
tParB
terminator
Rho-independent transcriptional terminator
predicted
aagttccactttagcggtgctaaagtggaacct
stem_1
CGATTTCACCTTGAA
stem_2
TCCAAGGTGAAATCG
Enterobacteria phage P1
p223
promoter
Enterobacteria phage P1 sigma 70 promoter
predicted
gacaaaaatttcatttaatgagatttta
-35
AAACAG
-10
ATTTTA
Enterobacteria phage P1
pParB
promoter
Enterobacteria phage P1 sigma 70 promoter
experimental
Promoter probe vectors
ttctaaaacgatttcgtcaaaaactggcataactta
-35
AATCTT
-10
ACGGTC
+1
AT
Enterobacteria phage P1
pPar
promoter
Enterobacteria phage P1 sigma 70 promoter
experimental
Promoter probe vectors
acatgttcgtagatgcgtatgtaataata
-35
TGTACA
-10
ATAATA
Enterobacteria phage P1
tRepA
terminator
Rho-independent transcriptional terminator
predicted
ctccccctgcggggag
stem_1
CCCCCTC
stem_2
GAGGGG
Enterobacteria phage P1
pRepA
promoter
Enterobacteria phage P1 sigma 70 promoter
experimental
Primer extension
aacgattacacacgaccgccctatatccta
-35
TAGCAA
-10
ATCCTA
Enterobacteria phage P1
tUpfA
terminator
Rho-independent transcriptional terminator
predicted
ggccgatgcaaccggcc
stem_1
TAGCCGG
stem_2
CCGGCCA
Enterobacteria phage P1
p1PpfA
promoter
Enterobacteria phage P1 sigma 70 promoter
predicted
aactacttaatttgtttcgccgtgtca
-35
CATCAA
-10
ACTGTG
Enterobacteria phage P1
p2PpfA
promoter
Enterobacteria phage P1 sigma 70 promoter
predicted
aacttcgtgacttccttcgatgacttgtta
-35
CTTCAA
-10
ATTGTT
Enterobacteria phage P1
oDmt
operator
C1-controlled operator of P1 phage
experimental
ATTGCTCTAATAAATAT
Enterobacteria phage P1
pDmt
promoter
Enterobacteria phage P1 sigma 70 promoter
experimental
Primer extension
TTGTTTTTTATGTCGTGTTTTCGGTACCAT
-35
TTGTTT
-10
TACCAT
Enterobacteria phage P1
tHrdC
terminator
Rho-independent transcriptional terminator
predicted
CTCGGTGCGGAAGGGCGGTCTGAG
stem_1
CTCGGTGCG
stem_2
CGGTCTGAG
Enterobacteria phage P1
p2Ban
promoter
Enterobacteria phage P1 sigma 70 promoter
predicted
ATGACGTTTTGGGTATATTGCTCTAATAAATT
-35
ATGACG
-10
TAAATT
Enterobacteria phage P1
oBanA
operator
C1-controlled operator of P1 phage
experimental
ATTGCTCTAATAAATTT
Enterobacteria phage P1
p1Ban
promoter
Enterobacteria phage P1 sigma 70 promoter
experimental
DNase1 footprinting
EMSA - gel shift
TTGCTCTAATAAATTTATTAGTGTAATATCGCCTCA
-35
TTGCTC
-10
TAATAT
+1
A
Enterobacteria phage P1
oBanB
operator
C1-controlled operator of P1 phage
experimental
taatgtgattatttaaa
Enterobacteria phage P1
tDmt
terminator
Rho-independent transcriptional terminator
predicted
GCCCATCTTCGGGTGGGC
stem_1
GCCCATC
stem_2
GGTGGGC
Enterobacteria phage P1
p1Upl
promoter
Enterobacteria phage P1 sigma 70 promoter
predicted
aactcttacggctcgtaaataattgga
-35
TCTCAA
-10
AGGTTA
Enterobacteria phage P1
p2Upl
promoter
Enterobacteria phage P1 sigma 70 promoter
predicted
aactgaggcggtcggcgaaacgccttaaa
-35
AGTCAA
-10
AAATTC
Enterobacteria phage P1
tAstciA
terminator
Rho-independent transcriptional terminator
predicted
aggcggtcggcgaaacgcct
stem_1
GCGGA
stem_2
TCCGC
Enterobacteria phage P1
p2Dbn
promoter
Enterobacteria phage P1 sigma 70 promoter
predicted
TTGAGATGCCGAGCCACCAGCTGATGAT
-35
TTGAGA
-10
GATGAT
Enterobacteria phage P1
p1Dbn
promoter
Enterobacteria phage P1 sigma 70 promoter
predicted
TTGAACAGCGTGCGGACAAACGACCGGTAAATT
-35
TTGAAC
-10
TAAATT
Enterobacteria phage P1
tDbn
terminator
Rho-independent transcriptional terminator
predicted
GCCCGAACGCCGGGC
stem_1
GCCCG
stem_2
CGGGC
Enterobacteria phage P1
t5
terminator
Rho-independent transcriptional terminator
predicted
cgggccgcaagcccg
stem_1
CGGGC
stem_2
GCCCG
Enterobacteria phage P1
tAs7
terminator
Rho-independent transcriptional terminator
predicted
CCTGCGTTTGCAGG
stem_1
CCTGC
stem_2
GCAGG
Enterobacteria phage P1
Lp26
promoter
Enterobacteria phage P1 late promoter
experimental
Primer extension
tttactgatcgccatctta
-10
ATTCTA
Enterobacteria phage P1
LpPmgL
promoter
Enterobacteria phage P1 late promoter
experimental
Promoter probe vectors
TAGTCATTTGTTGAATATT
-10
AATATT
Enterobacteria phage P1
p2PmgL
promoter
Enterobacteria phage P1 sigma 70 promoter
predicted
TTGAATATTTAACTCAATAAAAGAAAAT
-35
TTGAAT
-10
GAAAAT
Enterobacteria phage P1
o26
operator
C1-controlled operator of P1 phage
experimental
taacgtgattattaaaa
Enterobacteria phage P1
p1PmgL
promoter
Enterobacteria phage P1 sigma 70 promoter
predicted
GTGCAATTTTGATTGTGAAATGTATCAT
-35
GTGCAA
-10
TATCAT
Enterobacteria phage P1
p26
promoter
Enterobacteria phage P1 sigma 70 promoter
predicted
cagtttaggacggccagcgtacggtataa
-35
TTTGAC
-10
AATATG
Enterobacteria phage P1
tAsPmgM
terminator
Rho-independent transcriptional terminator
predicted
cacggaagcgtacacctctttg
stem_1
GAAGGCAC
stem_2
GTTTCTCC
Enterobacteria phage P1
pPmgN
promoter
Enterobacteria phage P1 sigma 70 promoter
predicted
TTGAACGGCGATAAGTGGTTGTATGCT
-35
TTGAAC
-10
TATGCT
Enterobacteria phage P1
oPpp
operator
C1-controlled operator of P1 phage
experimental
gtacgtgattaattaaa
Enterobacteria phage P1
oPmgRa
operator
C1-controlled operator of P1 phage
experimental
ATTGCTCTAATAATTCC
Enterobacteria phage P1
pPmgR
promoter
Enterobacteria phage P1 sigma 70 promoter
predicted
TTGCTCTAATAATTCCATATTTTTAAAAC
-35
TTGCTC
-10
TAAAAC
Enterobacteria phage P1
tPmgQ
terminator
Rho-independent transcriptional terminator
predicted
CGTGATGTACACTCATCACG
stem_1
CGTGATG
stem_2
CATCACG
Enterobacteria phage P1
oPmgRb
operator
C1-controlled operator of P1 phage
experimental
taacgagattatttttt
Enterobacteria phage P1
tPmgS
terminator
Rho-independent transcriptional terminator
predicted
TGCTGGTGGAGTGCGCCCACCAGCA
stem_1
TGCTGGTGG
stem_2
CCACCAGCA
Enterobacteria phage P1
p1PmgT
promoter
Enterobacteria phage P1 sigma 70 promoter
predicted
TTGATATGGTGCGCCAGTTATTTAACGT
-35
TTGATA
-10
TAACGT
Enterobacteria phage P1
oPmgT
operator
C1-controlled operator of P1 phage
experimental
ATTGCTCTAATAAATCT
Enterobacteria phage P1
p2PmgT
promoter
Enterobacteria phage P1 sigma 70 promoter
predicted
TTGCTCTAATAAATCTTGATTTTTAAAAC
-35
TTGCTC
-10
TAAAAC
Enterobacteria phage P1
p3PmgT
promoter
Enterobacteria phage P1 sigma 70 promoter
experimental
Primer extension
Promoter probe vectors
TTGATTTTTAAAACAGAGAAAGTGAAAAT
-35
TTGATT
-10
GAAAAT
Enterobacteria phage P1
tAsPmgT
terminator
Rho-independent transcriptional terminator
predicted
gtacggcgcggaacgccgtac
stem_1
GCGGCATG
stem_2
CATGCCGC
Enterobacteria phage P1
tPap
terminator
Rho-independent transcriptional terminator
predicted
TGCCGCAAGGCGCGGCA
stem_1
TGCCGC
stem_2
GCGGCA
Enterobacteria phage P1
p1UpfM
promoter
Enterobacteria phage P1 sigma 70 promoter
predicted
TTGTTTCCACATCAAGGAGATTTTAATGT
-35
TTGTTT
-10
TAATGT
Enterobacteria phage P1
p2UpfM
promoter
Enterobacteria phage P1 sigma 70 promoter
predicted
CTGAAACATTAAGTAAGCCAGTGCATAAT
-35
CTGAAA
-10
CATAAT
Enterobacteria phage P1
pUpfN
promoter
Enterobacteria phage P1 sigma 70 promoter
predicted
TTGACGTAGAAACCCAACCCTTATATAGT
-35
TTGACG
-10
TATAGT
Enterobacteria phage P1
LpHot
promoter
Enterobacteria phage P1 late promoter
experimental
Promoter probe vectors
AAGTTACTTTGCTGGTTAAATAAT
-10
AATAAT
Enterobacteria phage P1
p1Lxr
promoter
Enterobacteria phage P1 sigma 70 promoter
predicted
gactactaaaacacgcgaaacgatgata
-35
CATCAG
-10
ATAGTA
Enterobacteria phage P1
p1HumD
promoter
Enterobacteria phage P1 sigma 70 promoter
predicted
TTTGCACCAAAGGTGTCTCTTTAATGT
-35
TTTGCA
-10
TAATGT
Enterobacteria phage P1
p2Lxr
promoter
Enterobacteria phage P1 sigma 70 promoter
predicted
aagtggagttattatgacaagtaaatatgtca
-35
GGTGAA
-10
ACTGTA
Enterobacteria phage P1
pPhd
promoter
Enterobacteria phage P1 sigma 70 promoter
experimental
DNase1 footprinting
EMSA - gel shift
TGGTGCTTTATGCCTGTGAAGTTTATAAT
-35
TGGTGC
-10
TATAAT
Enterobacteria phage P1
tAsDoc
terminator
Rho-independent transcriptional terminator
predicted
cggcatcgccg
stem_1
CGGC
stem_2
GCCG
Enterobacteria phage P1
oLpa
operator
C1-controlled operator of P1 phage
experimental
ATTGCTCTAATGTATTG
Enterobacteria phage P1
pLpa
promoter
Enterobacteria phage P1 sigma 70 promoter
experimental
EMSA - gel shift
Primer extension
TTGCTATTTCTTTAATCGAGGGTATTATATTCCACG
-35
TTGCTA
-10
TATTAT
+1
G
Enterobacteria phage P1
tLpa
terminator
Rho-independent transcriptional terminator
predicted
GCCCGTTCCGGGC
stem_1
GCCCG
stem_2
CGGGC
Enterobacteria phage P1
LpPac
promoter
Enterobacteria phage P1 late promoter
experimental
Promoter probe vectors
ATGTGACTTTCGTTACCCT
-10
TACCCT
Enterobacteria phage P1
pPacB
promoter
Enterobacteria phage P1 sigma 70 promoter
predicted
CCGATATCGTCGATACAGGTGGTTATGGT
-35
CCGATA
-10
TATGGT
Enterobacteria phage P1
tPacB
terminator
Rho-independent transcriptional terminator
predicted
CCGTGTACGCGCATACGG
stem_1
CCGTGT
stem_2
ATACGG
Enterobacteria phage P1
pC1
promoter
Enterobacteria phage P1 sigma 70 promoter
experimental
DNase1 footprinting
EMSA - gel shift
agataataaaagcaacctaggaagatattaccaccggt
-35
AATAGA
-10
ATTATA
+1
TG
Enterobacteria phage P1
oC1b
operator
C1-controlled operator of P1 phage
experimental
ACGAAAATAATAGATTT
Enterobacteria phage P1
oC1a
operator
C1-controlled operator of P1 phage
experimental
ttacgtgattatttaga
Enterobacteria phage P1
oC1c
operator
C1-controlled operator of P1 phage
experimental
taacgagattgcgaaat
Enterobacteria phage P1
p1Coi
promoter
Enterobacteria phage P1 sigma 70 promoter
experimental
Primer extension
aactgttaacgagattatttaatatcaaaacggcggc
-35
TGTCAA
-10
AAAACT
+1
C
Enterobacteria phage P1
oCoi
operator
C1-controlled operator of P1 phage
experimental
taacgagattatttaat
Enterobacteria phage P1
oCre
operator
C1-controlled operator of P1 phage
experimental
ATTGCTCTAATAATTCT
Enterobacteria phage P1
p4Cre
promoter
Enterobacteria phage P1 sigma 70 promoter
experimental
Promoter probe vectors
TTGATTTTTATGCGCAGCTGGACGTAAACTCCTCTTCA
-35
TTGATT
-10
TAAACT
+1
CA
Enterobacteria phage P2
tQ
terminator
putative rho-independent terminator for P operon
predicted
cggcggacgcccgccgaaaaaa
Enterobacteria phage P2
pP
promoter
Enterobacteria phage P2 late promoter
experimental
Linker scanning mutations
cgcttagcgccccgcgctgagtcatcggaacggcac
-35
ATTCGC
-10
AGGCTA
+1
C
Enterobacteria phage P2
pO
promoter
Enterobacteria phage P2 late promoter
experimental
Linker scanning mutations
TGGCGGAGGATGCGCATCGTCGGGAAACTGATGCCG
-35
TGGCGG
-10
GAAACT
+1
G
Enterobacteria phage P2
tO
terminator
putative rho-independent terminator for O operon
predicted
TAAACATTGAGCGGCCATGCTGGTCGCTCAATGTTTA
Enterobacteria phage P2
pV
promoter
Enterobacteria phage P2 late promoter
experimental
Linker scanning mutations
TAGCATAACTTTTATATATTGTGCAATCTCACATGCA
-35
TAGCAT
-10
CAATCT
+1
A
Enterobacteria phage P2
tV
terminator
putative rho-independent terminator for V operon
predicted
GAATGGCAAGTGTTTTCCACTCGCCATT
Enterobacteria phage P2
pF
promoter
Enterobacteria phage P2 late promoter
experimental
Linker scanning mutations
TAGCCTGACATCTCCGGCGCAACTGAAAATACCACTC
-35
TAGCCT
-10
GAAAAT
+1
C
Enterobacteria phage P2
pOgr
promoter
Enterobacteria phage P2 late promoter
experimental
Promoter probe vectors
S1 mapping
TTGTTTTGTAAGGATAAATTAACTAAAAT
-35
TTGTTT
-10
TAAAAT
+1
A
Enterobacteria phage P2
togr
terminator
rho-independent terminator for ogr transcript and F operon
experimental
AAAGCCCCTCAGTCGAGGGGCTTT
stem_1
AAAGCCCCTC
stem_2
GAGGGGCTTT
Enterobacteria phage P2
pE
promoter
Enterobacteria phage P2 early promoter
experimental
Promoter probe vectors
TTGACATGGTGTTTAGATCTCAATAGTAT
-35
TTGACA
-10
TAGTAT
Enterobacteria phage P2
P2 operator
operator
Enterobacteria phage P2 operator
experimental
GTTTAGATCTCAATAGTATTTAGTTTAGAT
O_1
GTTTAGAT
O_2
GTTTAGAT
Enterobacteria phage P2
pC
promoter
Enterobacteria phage P2 repressor promoter
experimental
DNase1 footprinting
EMSA - gel shift
Primer extension
Promoter probe vectors
tacttaacgcaaattacagaatatta
-35
ATTCAT
-10
ATTATA
Enterobacteria phage P2
t
terminator
putative rho-independent terminator
predicted
CGCACTTAATTGTGCGGGGCTTCTTTTT
Enterobacteria phage P2
pOLD
promoter
experimental
Primer extension
tacgtgggaacttacgttgctgatattttacattttttcgcaaag
Enterobacteria phage P21
oL
operator
P21 phage oL region
experimental
atttaagacttcttaatttattggtcaagtgcatttttgaagaaaacttaattttatgggcgtgaatttagtttgtctttga
O_1
atttaagacttcttaatt
O_2
tttgaagaaaacttaatt
O_3
aatttagtttgtctttga
Enterobacteria phage P21
oR
operator
P21 phage oR region
experimental
agttaagacctcttaaataaacttgacttaagattcctttggtggataatttaagtgttctttaat
O_3
agttaagacctcttaaat
O_2
acttaagattcctttggt
O_1
atttaagtgttctttaat
Enterobacteria phage P22
T11
terminator
Enterobacteria phage P22 rho-independent terminator
predicted
GCCGGAGTGACCCGGC
stem_1
GCCGG
stem_2
CCGGC
Enterobacteria phage P22
T12
terminator
Enterobacteria phage P22 rho-independent terminator
predicted
cggcccagtgaggccg
stem_1
CCGGC
stem_2
GCCGG
Enterobacteria phage P22
Pant
promoter
Enterobacteria phage P22 Pant promoter
experimental
DNase1 footprinting
EMSA - gel shift
Promoter probe vectors
TTGACATGATAGAAGCACTCTACTATATT
-35
TTGACA
-10
TATATT
Enterobacteria phage P22
Pmnt
promoter
Enterobacteria phage P22 Pmnt promoter
experimental
DNase1 footprinting
EMSA - gel shift
Promoter probe vectors
aactcttatatcatctcacgaagatagta
-35
TCTCAA
-10
ATGATA
Enterobacteria phage P22
Psar
promoter
experimental
cacaattgacgaagattttaacgatatgataagtac
-35
TAACAC
-10
AGTATA
+1
T
Enterobacteria phage P22
T13
terminator
Enterobacteria phage P22 rho-independent terminator
predicted
CCCAGCTTCGGCTGGG
stem_1
CCCAGC
stem_2
GCTGGG
Enterobacteria phage P22
T14
terminator
Enterobacteria phage P22 rho-independent terminator
predicted
CCGTAGCCATGCTGCGG
stem_1
CCGTAGC
stem_2
GCTGCGG
Enterobacteria phage P22
T15
terminator
Enterobacteria phage P22 rho-independent terminator
predicted
ggcgtcgtaccgatgcc
stem_1
GCTGCGG
stem_2
CCGTAGC
Enterobacteria phage P22
T16
terminator
Enterobacteria phage P22 rho-independent terminator
predicted
CCCGCATTGCCGGG
stem_1
CCCG
stem_2
CGGG
Enterobacteria phage P22
T1
terminator
Enterobacteria phage P22 rho-independent terminator
predicted
TTGATCGTTGTTACCGATCAA
stem_1
TTGATCG
stem_2
CGATCAA
Enterobacteria phage P22
attP
att site
Enterobacteria phage P22 attachment site
experimental
ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCAG
Enterobacteria phage P22
T2
terminator
Enterobacteria phage P22 rho-independent terminator
predicted
CCGCCATCAGGCGG
stem_1
CCGCC
stem_2
GGCGG
Enterobacteria phage P22
T3
terminator
Enterobacteria phage P22 rho-independent terminator
predicted
ggcggactaccgcc
stem_1
GGCGG
stem_2
CCGCC
Enterobacteria phage P22
T4
terminator
Enterobacteria phage P22 rho-independent terminator
predicted
GCCGCACTCAGGCGGC
stem_1
GCCGC
stem_2
GCGGC
Enterobacteria phage P22
T5
terminator
Enterobacteria phage P22 rho-independent terminator
predicted
cggcggactcacgccg
stem_1
GCGGC
stem_2
GCCGC
Enterobacteria phage P22
T6
terminator
Enterobacteria phage P22 rho-independent terminator
predicted
acggcgagatatacccgccgt
stem_1
GAGCGGCA
stem_2
TGCCGCCC
Enterobacteria phage P22
PsieB
promoter
Enterobacteria phage P22 PsieB promoter
experimental
RNase protection assay
TGTACCCCTACAGCGAGAAATCGGATAAACT
-35
TGTACC
-10
TAAACT
Enterobacteria phage P22
Pl
promoter
Enterobacteria phage P22 Pl promoter
experimental
N/A
aactggtaaattaattcttcagaatttaa
Enterobacteria phage P22
OL
operator
Enterobacteria phage P22 left operator region
experimental
AATTTAAGACTTCTTAATTAAATGGTCAAGTGTATTTTTGAAGAAAACTTAAATATTTTATCGTTACTTAAGTTTTTATTTGA
O_1
ATTTAAGACTTCTTAATT
O_2
TTTGAAGAAAACTTAAAT
O_3
ACTTAAGTTTTTATTTGA
Enterobacteria phage P22
OR
operator
Enterobacteria phage P22 right operator region
experimental
AGTTAAGTCATCTTAAATAAACTTGACTAAAGATTCCTTTAGTAGATAATTTAAGTGTTCTTTAAT
O_3
AGTTAAGTCATCTTAAAT
O_2
ACTAAAGATTCCTTTAGT
O_1
ATTTAAGTGTTCTTTAAT
Enterobacteria phage P22
Prm
promoter
Transcription of C2 represor gene in lysogen
experimental
tccttagaaatcagttcaaataaattcta
Enterobacteria phage P22
Pr
promoter
experimental
N/A
TTGACTAAAGATTCCTTTAGTAGATAAT
Enterobacteria phage P22
T7
terminator
Enterobacteria phage P22 rho-independent terminator
predicted
agcgaaagtgtcgcc
stem_1
AGCGA
stem_2
CCGCT
Enterobacteria phage P22
t a23
terminator
Terminator for transcription from Pa23 promoter
predicted
cgggcaccactcagtgagtagtagcccgaaaaa
Enterobacteria phage P22
Pa23
promoter
Promoter of anti-sense RNA (a23)
experimental
aacgctcgtgaacgtcatggaaacggaatcata
Enterobacteria phage P22
Plate
promoter
promoter of late operon transcription
experimental
N/A
TTGACTTTTTGAATAAAGTTGGGTAAATT
Enterobacteria phage P22
t late
terminator
Transcriptional terminator of late transcription
predicted
AGCCCTGAGTTTAACCGCTCGGGGCTTTT
Enterobacteria phage P22
T8
terminator
Enterobacteria phage P22 rho-independent terminator
predicted
GCCTCGCAGATGCGGGGC
stem_1
GCCTCGC
stem_2
GCGGGGC
Enterobacteria phage P22
T9
terminator
Enterobacteria phage P22 rho-independent terminator
predicted
GCCGCTTACTTAGCGGC
stem_1
GCCGC
stem_2
GCGGC
Enterobacteria phage P22
T10
terminator
Enterobacteria phage P22 rho-independent terminator
predicted
cggcgattcattcgccg
stem_1
AGCGGC
stem_2
GCCGCT
Enterobacteria phage P4
pgop
promoter
P4 promoter for transcription of gop and beta
experimental
S1 mapping
TTGATGGCACTATCCTGAAAAATATGCAAAAAATAGAT
-35
TTGATG
-10
TATGCA
+1
T
Enterobacteria phage P4
tCII
terminator
Putative rho independent terminator of cII transcription
predicted
gatcccttccgattggaagggatc
stem_1
CCTTCCCTAG
stem_2
CTAGGGAAGG
Enterobacteria phage P4
pcII
promoter
P4 promoter for transcription of cII
experimental
S1 mapping
acctcaaaaattaacaatcaacgatattatttttagttgc
-35
ACTCCA
-10
ATTATA
+1
C
Enterobacteria phage P4
pint
promoter
P4 promoter for integrase transcription
experimental
EMSA - gel shift
Primer extension
Promoter probe vectors
aactttaggcctatagtaacccccgtattaacccccg
-35
TTTCAA
-10
ATTATG
+1
G
Enterobacteria phage P4
talpha
terminator
Putative rho-independent terminator of transcription of alpha
predicted
ctggccgtagacggccag
stem_1
TGCCGGTC
stem_2
GACCGGCA
Enterobacteria phage P4
t151
terminator
Enterobacteria phage P4 rho-independent terminator
experimental
tacacgcataagcgcgtccctatgcgtgca
stem_1
ATACGCACAT
stem_2
ACGTGCGTAT
Enterobacteria phage P4
timm
terminator
Enterobacteria phage P4 rho-dependent terminator
experimental
gggaatgggggagtgtgggacttaaacagaaacacaaacgccgacaggcagcgcgtctggcagtaggggcatagacatacgaagcgtggcagcg
Enterobacteria phage P4
t4
terminator
Enterobacteria phage P4 transcriptional terminator
experimental
cgacggtagtaccgatgttgggaatgggggagtgtgggacttaaa
Enterobacteria phage P4
t1
terminator
Enterobacteria phage P4 rho-independent terminator t1
experimental
ctgcgcggtgcgcag
stem_1
CGCGTC
stem_2
GACGCG
Enterobacteria phage P4
pLE
promoter
Enterobacteria phage P4 early promoter
experimental
DNase1 footprinting
EMSA - gel shift
aacggaaaaaggccgtaaacgcctatatcaaaaagc
-35
AGGCAA
-10
ACTATA
+1
C
Enterobacteria phage P4
pLL
promoter
Enterobacteria phage P4 early promoter
experimental
DNase1 footprinting
EMSA - gel shift
aacgcagacgacttttataagtgttttatttcgcg
-35
ACGCAA
-10
ATTTTG
+1
G
Enterobacteria phage P4
psid
promoter
Enterobacteria phage P4 late promoter pSid
experimental
DNase1 footprinting
EMSA - gel shift
Promoter probe vectors
TCGTGTTGTTGTCCGGTGTACGTCACAATTTTCTTA
-35
TCGTGT
-10
CACAAT
+1
A
Enterobacteria phage phi80
AttP
att site
Phage phi80 AttP region
experimental
agaacactttcttaaat
Enterobacteria phage SP6
pC1
promoter
Bacteriophage SP6 pC1 promoter
predicted
G
+1
G
Enterobacteria phage SP6
pC2
promoter
Bacteriophage SP6 pC2 promoter
predicted
A
+1
A
Enterobacteria phage SP6
pC3
promoter
Bacteriophage SP6 pC3 promoter
predicted
G
+1
G
Enterobacteria phage SP6
pC4
promoter
Bacteriophage SP6 pC4 promoter
predicted
G
+1
G
Enterobacteria phage SP6
t1
terminator
Bacteriophage SP6 t1 terminator
predicted
GTCAGCCTTCGGGCTGGC
stem_1
GTCAGCC
stem_2
GGCTGGC
Enterobacteria phage SP6
P1
promoter
Bacteriophage SP6 P1 promoter
predicted
ATTTAAGGGACACTATAG
+1
G
Enterobacteria phage SP6
P2
promoter
Bacteriophage SP6 P2 promoter
predicted
AATTAGGTGACACTATAG
+1
G
Enterobacteria phage SP6
P3
promoter
Bacteriophage SP6 P3 promoter
predicted
TATTACGTGACACTATAG
+1
G
Enterobacteria phage SP6
t2
terminator
Bacteriophage SP6 t2 terminator
predicted
GGTCACTTACGAGTGGCC
stem_1
GGTCACT
stem_2
AGTGGCC
Enterobacteria phage SP6
P4
promoter
Bacteriophage SP6 P4 promoter
predicted
ATTTAGGTGACACTATAG
+1
G
Enterobacteria phage SP6
P5
promoter
Bacteriophage SP6 P5 promoter
predicted
AATTAGGTGACACTATAG
+1
G
Enterobacteria phage SP6
t3
terminator
Bacteriophage SP6 t3 terminator
predicted
CCGATACAGTATCGG
stem_1
CCGATAC
stem_2
GTATCGG
Enterobacteria phage SP6
P6
promoter
Bacteriophage SP6 P6 promoter
predicted
ATTTAGGGGACACTATAG
+1
G
Enterobacteria phage SP6
t4
terminator
Bacteriophage SP6 t4 terminator
predicted
GCCCTGTCTGCCTTAGTGTAGGCAGGGTC
stem_1
GCCCTGTCTGCCTTA
stem_2
TAGGCAGGGTC
Enterobacteria phage SP6
P7
promoter
Bacteriophage SP6 P7 promoter
predicted
ATTTAAGTGACACTATAG
+1
G
Enterobacteria phage SP6
P8
promoter
Bacteriophage SP6 P8 promoter
predicted
ATTTAGGTGACACTATAG
+1
G
Enterobacteria phage SP6
t5
terminator
Bacteriophage SP6 t5 terminator
predicted
CCCTATCTACCTTGCGTAGGTAGGG
stem_1
CCCTATCTACC
stem_2
GCGTAGGTAGGG
Enterobacteria phage SP6
t6
terminator
Bacteriophage SP6 t6 terminator
predicted
GTTGTCTAACATGTTGGACAGC
stem_1
GTTGTCTAACA
stem_2
TGTTGGACAGC
Enterobacteria phage SP6
P9
promoter
Bacteriophage SP6 P9 promoter
predicted
AATTAGGGGACACTATAG
+1
G
Enterobacteria phage SP6
P10
promoter
Bacteriophage SP6 P10 promoter
predicted
ATTTAGGTGACACTATAG
+1
G
Enterobacteria phage SP6
t7
terminator
Bacteriophage SP6 t7 terminator
predicted
GCAGCGCGTTAGCGCTGCTTTC
stem_1
GCAGCGCG
stem_2
GCTGCTTTC
Enterobacteria phage T3
A0
promoter
T3 promoter for host RNA polymerase (leftward)
experimental
N/A
aactgaaatccgtagtgaaatccga
-35
AGTCAA
-10
AGCCTA
Enterobacteria phage T3
phiOL
promoter
T3 promoter for T3 RNA polymerase
experimental
N/A
TATTTACCCTCACTAAAGGGAAT
Enterobacteria phage T3
A1
promoter
T3 promoter for host RNA polymerase
experimental
N/A
TTGACTTTAAGTTACCTTTAAGGCTATTAT
-35
TTGACT
-10
TATTAT
Enterobacteria phage T3
A2
promoter
T3 promoter for host RNA polymerase
experimental
N/A
TTGACAACGCAAGGTAACAAGTAGTAAGAT
-35
TTGACA
-10
TAAGAT
Enterobacteria phage T3
A3
promoter
T3 promoter for host RNA polymerase
experimental
N/A
TTGACAACATGAAGTAAGCACGGTACGAT
-35
TTGACA
-10
TACGAT
Enterobacteria phage T3
B
promoter
T3 promoter for host RNA polymerase
experimental
N/A
ATGAGTTCGGTCGCCGCTGGCAAGTACAAT
-35
ATGAGT
-10
TACAAT
Enterobacteria phage T3
C
promoter
T3 promoter for host RNA polymerase
experimental
N/A
TTGACAAGCGTCTACAAGGCTGATAGAGT
-35
TTGACA
-10
TAGAGT
Enterobacteria phage T3
phi1.05
promoter
T3 promoter for T3 RNA polymerase
experimental
N/A
CATTAACCCTCACTAACGGGAGA
Enterobacteria phage T3
phi1.1
promoter
T3 promoter for T3 RNA polymerase
experimental
N/A
AGTTAACCCTCACTAACGGGAGA
Enterobacteria phage T3
phi1.3
promoter
T3 promoter for T3 RNA polymerase
experimental
N/A
TAATAACCCTCACTAACAGGAGA
Enterobacteria phage T3
TE
terminator
T3 rho-independent early transcriptional terminator TE
experimental
GGCTCACCTTCACGGGTGGGCC
stem_1
GGCTCACC
stem_2
GGTGGGCC
Enterobacteria phage T3
phi1.5
promoter
T3 promoter for T3 RNA polymerase
experimental
N/A
CATTAACCCTCACTAACAGGAGA
Enterobacteria phage T3
phi2.5
promoter
T3 promoter for T3 RNA polymerase
experimental
N/A
TAATTACCCTCACTAAAGGGAAC
Enterobacteria phage T3
phi3.8
promoter
T3 promoter for T3 RNA polymerase
experimental
N/A
AATTAACACTCACTAAAGGGAGA
Enterobacteria phage T3
phi4.3
promoter
T3 promoter for T3 RNA polymerase
experimental
N/A
AATTAACCCTCACTAACGGGAAC
Enterobacteria phage T3
phi6.5
promoter
T3 promoter for T3 RNA polymerase
experimental
N/A
AATTAACCCTCACTAAAGGGAAG
Enterobacteria phage T3
phi9
promoter
T3 promoter for T3 RNA polymerase
experimental
N/A
TAATTACCCTCACTAAAGGGAGA
Enterobacteria phage T3
phi10
promoter
T3 promoter for T3 RNA polymerase
experimental
N/A
AATTAACCCTCACTAAAGGGAGA
Enterobacteria phage T3
Tphi
terminator
T3 rho-independent major transcriptional terminator
experimental
AAACCCCTTGGGTTCCCTCTTTGGGAGTCTGAGGGGTTT
stem_1
AAACCCCTTGGGTTCCC
stem_2
GGGAGTCTGAGGGGTTT
Enterobacteria phage T3
phi11
promoter
T3 promoter for T3 RNA polymerase
experimental
N/A
CTTTAACCCTCACTAACAGGAGG
Enterobacteria phage T3
phi13
promoter
T3 promoter for T3 RNA polymerase
experimental
N/A
AATTAACCCTCACTAAAGGGAGA
Enterobacteria phage T3
phiOR
promoter
T3 promoter for T3 RNA polymerase
experimental
N/A
CATTAACCCTCACTAAAGGGAGA
Enterobacteria phage T4
PrIIB2
promoter
Enterobacteria phage T4 middle promoter
experimental
Primer extension
S1 mapping
ttacgaagttttttgtcactattttaccaacgac
-35
TGAAGCATT
-10
ATTTTA
+1
C
Enterobacteria phage T4
PrIIB1
promoter
Enterobacteria phage T4 middle promoter
experimental
Primer extension
S1 mapping
ctacgaaaactactacatctaatactattcatac
-35
AAAAGCATC
-10
ATCATA
+1
C
Enterobacteria phage T4
PrIIA
promoter
Enterobacteria phage T4 middle promoter
experimental
DNase1 footprinting
Primer extension
gggcgaaatttctataatctctattttaagttaggc
-35
TAAAGCGGG
-10
ATTTTA
+1
CG
Enterobacteria phage T4
P2.3
promoter
Enterobacteria phage T4 early promoter
experimental
Primer extension
aactatttcgtcaagtagctcttatatcttagtaagtt
-35
TATCAA
-10
ATTCTA
+1
T
Enterobacteria phage T4
P1.4-3.9
promoter
Enterobacteria phage T4 early promoter
experimental
Primer extension
Promoter probe vectors
caaatgaaatggtgttcctacaccatatta
-35
AGTAAAC
-10
ATTATA
Enterobacteria phage T4
P3.6
promoter
Enterobacteria phage T4 early promoter
experimental
Primer extension
Promoter probe vectors
caaatgaaagctcgatttaccgctatgtta
-35
AGTAAAC
-10
ATTGTA
Enterobacteria phage T4
P39
promoter
Enterobacteria phage T4 middle promoter
experimental
Primer extension
S1 mapping
aatcgaaatactaatggcctcatattataagggc
-35
TAAAGCTAA
-10
ATTATA
+1
C
Enterobacteria phage T4
t39.1
terminator
Rho-independent transcriptional terminator
predicted
ccggaagcccgg
stem_1
GGCC
stem_2
GGCC
Enterobacteria phage T4
P5.3/1
promoter
Enterobacteria phage T4 early promoter
predicted
aatgattataactttagtgacctatattaaccaagc
-35
TAGTAA
-10
ATTATA
Enterobacteria phage T4
P5.3/2
promoter
Enterobacteria phage T4 early promoter
predicted
aacagaagttcaccaaaatgattataactttagtgacc
-35
AGACAA
-10
TTTCAA
Enterobacteria phage T4
P5.3/3
promoter
Enterobacteria phage T4 early promoter
predicted
aacagaagttcaccaaaatgattataactttag
-35
AGACAA
-10
ATATTA
Enterobacteria phage T4
Pcef
promoter
experimental
DNase1 footprinting
EMSA - gel shift
Primer extension
tatatgtagtcatcaactaataccatgatatagttat
-35
TGTATAT
-10
ATAGTA
+1
T
Enterobacteria phage T4
PmotB
promoter
Enterobacteria phage T4 early promoter
experimental
DNase1 footprinting
EMSA - gel shift
Primer extension
caaatgtttgagaaccctggtctcatattaccagggc
-35
TGTAAAC
-10
ATTATA
+1
C
Enterobacteria phage T4
P8.1
promoter
Enterobacteria phage T4 early promoter
experimental
EMSA - gel shift
Promoter probe vectors
caaatgaaggagccaatcaacaccatgata
-35
AGTAAAC
-10
ATAGTA
Enterobacteria phage T4
P11.5
promoter
Enterobacteria phage T4 early promoter
experimental
EMSA - gel shift
Promoter probe vectors
caaatgttcaatttcatttttacaatatca
-35
TGTAAAC
-10
ACTATA
Enterobacteria phage T4
PmodB
promoter
Enterobacteria phage T4 early promoter
experimental
DNase1 footprinting
EMSA - gel shift
Primer extension
Promoter probe vectors
caaatgaaaggaaagattgctactatactatcgaaga
-35
AGTAAAC
-10
ATCATA
+1
A
Enterobacteria phage T4
Pmrh.2
promoter
Enterobacteria phage T4 early promoter
experimental
DNase1 footprinting
EMSA - gel shift
Primer extension
caaatgaaaggttttactcataccatattatcttaat
-35
AGTAAAC
-10
ATTATA
+1
T
Enterobacteria phage T4
tsoc
terminator
Rho-independent transcriptional terminator
predicted
cctgaggaagccctcagg
stem_1
GGAGTCC
stem_2
GGACTCC
Enterobacteria phage T4
Psoc
promoter
Enterobacteria phage T4 late promoter
experimental
N/A
aatgaataagtcttttcttctacatatttat
-10
TATTTATA
Enterobacteria phage T4
Psoc(w2)
promoter
Enterobacteria phage T4 late promoter
experimental
N/A
gtaaataacatttaggtatattactatttat
-10
TATTTATC
Enterobacteria phage T4
P16.0
promoter
Enterobacteria phage T4 early promoter
experimental
Run-off transcription assay
aacacctatataaagtaaagcataatttat
-35
CCACAA
-10
TATTTA
Enterobacteria phage T4
Psoc(w1)
promoter
Enterobacteria phage T4 late promoter
experimental
N/A
gaacacctatataaagtaaagcataatttat
-10
TATTTAAT
Enterobacteria phage T4
P56/69
promoter
Enterobacteria phage T4 middle promoter
experimental
Primer extension
S1 mapping
taacgaatgtatgagtttactatattaataaatt
-35
TGTAAGCAAT
-10
ATTATA
+1
TT
Enterobacteria phage T4
P16.8 REV
promoter
Enterobacteria phage T4 early promoter
experimental
Run-off transcription assay
TTCATCTTCTGACCAAAATTTATTATAAT
-35
TTCATC
-10
TATAAT
Enterobacteria phage T4
P16.8
promoter
Enterobacteria phage T4 early promoter
experimental
Run-off transcription assay
cactattttattagaaatcaagtaacgta
-35
TTATCAC
-10
ATGCAA
Enterobacteria phage T4
P17.4
promoter
Enterobacteria phage T4 early promoter
experimental
Run-off transcription assay
aattataaatagcgttttgcacaatcata
-35
TATTAA
-10
ATACTA
Enterobacteria phage T4
P17.7
promoter
Enterobacteria phage T4 early promoter
experimental
Run-off transcription assay
acctttagttttctacaattactatacta
-35
TTTCCA
-10
ATCATA
Enterobacteria phage T4
P61
promoter
Enterobacteria phage T4 middle promoter
experimental
DNase1 footprinting
Primer extension
ttacgaaaatacttatctccaattatacttttgt
-35
AAAAGCATT
-10
ATATTA
+1
T
Enterobacteria phage T4
P19.8
promoter
Enterobacteria phage T4 early promoter
experimental
caaatgaaaacaacctttaactctatgata
-35
AGTAAAC
-10
ATAGTA
Enterobacteria phage T4
Pdmd
promoter
Enterobacteria phage T4 early promoter
experimental
DNase1 footprinting
EMSA - gel shift
Primer extension
Run-off transcription assay
caaatgttcgactgttctgataccatatcatcagaac
-35
TGTAAAC
-10
ACTATA
+1
C
Enterobacteria phage T4
P40
promoter
Enterobacteria phage T4 middle promoter
experimental
DNase1 footprinting
EMSA - gel shift
Primer extension
Run-off transcription assay
aaactaatttcgaagatgaagatttaa
-35
TTAATCAAA
-10
AATTTA
Enterobacteria phage T4
PuvsX
promoter
Enterobacteria phage T4 middle promoter
experimental
aaacgaattattaggtataccaatattatctttat
-35
TTAAGCAAA
-10
ATTATA
+1
T
Enterobacteria phage T4
PsegA
promoter
Enterobacteria phage T4 middle promoter
experimental
EMSA - gel shift
Primer extension
S1 mapping
ctacgaaagataagttgtactataaaatttatttt
-35
GAAAGCATC
-10
AAAATA
+1
TA
+1
T
Enterobacteria phage T4
P26.0
promoter
Enterobacteria phage T4 early promoter
predicted
aacgaaaattagaactactaatattattcatatat
-35
AAGCAA
-10
TTATTA
Enterobacteria phage T4
P42
promoter
Enterobacteria phage T4 middle promoter
experimental
DNase1 footprinting
EMSA - gel shift
Primer extension
taacgaaaattagaactactaatattattcatat
-35
AAAAGCAAT
-10
ATTATA
+1
T
Enterobacteria phage T4
P26.1
promoter
Enterobacteria phage T4 early promoter
predicted
aattgaccagttaataaccaaccaaataatgtaaat
-35
AGTTAA
-10
AATAAA
Enterobacteria phage T4
P26.2
promoter
Enterobacteria phage T4 early promoter
predicted
accaaaatcaaagtccgcacaaccgataataatatatg
-35
AAACCA
-10
ATAATA
Enterobacteria phage T4
Pimm.1
promoter
Enterobacteria phage T4 early promoter
experimental
DNase1 footprinting
EMSA - gel shift
Primer extension
Run-off transcription assay
caaatgttctgacaagaaggtaccatgatatgttgat
-35
TGTAAAC
-10
ATAGTA
+1
T
Enterobacteria phage T4
t43
terminator
Rho-independent transcriptional terminator
predicted
cctggaggtccagg
stem_1
GGTCC
stem_2
GGACC
Enterobacteria phage T4
P43
promoter
Enterobacteria phage T4 middle promoter
experimental
Primer extension
S1 mapping
ccccgaagccggggaataaacctcatattatatagtt
-35
CGAAGCCCC
-10
ATACTC
+1
TTG
Enterobacteria phage T4
tregA
terminator
Rho-independent transcriptional terminator
predicted
ccccgaagccgggg
stem_1
GCCCC
stem_2
GGGGC
Enterobacteria phage T4
t45
terminator
Rho-independent transcriptional terminator
predicted
cccgaagccgga
stem_1
GCCC
stem_2
AGGC
Enterobacteria phage T4
P45
promoter
Enterobacteria phage T4 middle promoter
experimental
Primer extension
S1 mapping
taacgaaataatttaatcaatattttaatttaga
-35
TAAAGCAAT
-10
ATTTTA
+1
A
Enterobacteria phage T4
P45.2
promoter
Enterobacteria phage T4 middle promoter
experimental
Primer extension
S1 mapping
atacgaaattaaataatctcatattagagatac
-35
TAAAGCATA
-10
ATTATA
+1
C
Enterobacteria phage T4
P46
promoter
Enterobacteria phage T4 middle promoter
experimental
DNase1 footprinting
EMSA - gel shift
Primer extension
ttatgaaaaatctaatactactatactatcttacc
-35
AAAAGTATT
-10
ATCATA
+1
CC
Enterobacteria phage T4
P35.3
promoter
Enterobacteria phage T4 early promoter
experimental
DNase1 footprinting
EMSA - gel shift
Primer extension
aaaatgtttagatagtcatgcacaatatca
-35
TGTAAAA
-10
ACTATA
Enterobacteria phage T4
P47
promoter
Enterobacteria phage T4 middle promoter
experimental
Primer extension
S1 mapping
aatcgaaatatgcctcaaactatattactataaagaac
-35
TAAAGCTAA
-10
ATTATA
+1
GA
+1
C
Enterobacteria phage T4
ta-gt
terminator
Rho-independent transcriptional terminator
predicted
cccgaagccggg
stem_1
GCCC
stem_2
GGGC
Enterobacteria phage T4
Pagt.1
promoter
Enterobacteria phage T4 middle promoter
experimental
Primer extension
S1 mapping
taacgaaatatttaaaaaaccattttatttgat
-35
TAAAGCAAT
-10
ATTTTA
+1
TAG
Enterobacteria phage T4
ta-gt.2
terminator
Rho-independent transcriptional terminator
predicted
cctcgaagccgagg
stem_1
GCTCC
stem_2
GGAGC
Enterobacteria phage T4
P55
promoter
Enterobacteria phage T4 middle promoter
experimental
DNase1 footprinting
EMSA - gel shift
Primer extension
tatccagaagtttataatactatattatctagat
-35
AAGACCTAT
-10
ATTATA
+1
TA
Enterobacteria phage T4
P55'
promoter
Enterobacteria phage T4 middle promoter
experimental
taactaagtaggagatacgaaattcta
-35
TGAATCAAT
-10
ATCTTA
Enterobacteria phage T4
t55.3
terminator
Rho-independent transcriptional terminator
predicted
cccgaagccgga
stem_1
GCCC
stem_2
AGGC
Enterobacteria phage T4
P40.4
promoter
Enterobacteria phage T4 early promoter
experimental
EMSA - gel shift
Primer extension
Promoter probe vectors
caaatgtaactactactaaaactaatatta
-35
TGTAAAC
-10
ATTATA
Enterobacteria phage T4
P41.0
promoter
Enterobacteria phage T4 early promoter
experimental
EMSA - gel shift
Primer extension
Promoter probe vectors
caaatgttgttcaagtttggcaccataata
-35
TGTAAAC
-10
ATAATA
Enterobacteria phage T4
tnrdH
terminator
Rho-independent transcriptional terminator
predicted
ccgggagacccgg
stem_1
GGCCC
stem_2
GGGCC
Enterobacteria phage T4
P55.8
promoter
Enterobacteria phage T4 middle promoter
experimental
DNase1 footprinting
EMSA - gel shift
Primer extension
aaacgtatttacgcttccaacaatattagcatcat
-35
TTATGCAAA
-10
ATTATA
+1
T
Enterobacteria phage T4
P55.9
promoter
Enterobacteria phage T4 middle promoter
experimental
DNase1 footprinting
EMSA - gel shift
Primer extension
aaccgataagtggtctgcctttatgttatcttgatt
-35
AATAGCCAA
-10
ATTGTA
+1
TT
Enterobacteria phage T4
PI-TevII
promoter
Enterobacteria phage T4 late promoter
experimental
N/A
actgtacgtcgacaaataggagcatatttat
-10
TATTTATA
Enterobacteria phage T4
P49.1
promoter
Enterobacteria phage T4 middle promoter
experimental
Primer extension
S1 mapping
ctacgaagtttctcctaaacttatattacttagact
-35
TGAAGCATC
-10
ATTATA
+1
T
Enterobacteria phage T4
tpin
terminator
Rho-independent transcriptional terminator
predicted
gggaatagataaattccattccc
stem_1
AGATAAGGG
stem_2
CCCTTACCT
Enterobacteria phage T4
P49
promoter
Enterobacteria phage T4 late promoter
experimental
N/A
ttacaaaatgttatgaacttttattatttat
-10
TATTTATT
Enterobacteria phage T4
P46.7
promoter
Enterobacteria phage T4 early promoter
experimental
EMSA - gel shift
Primer extension
Promoter probe vectors
caaatgtgactacttctttgccacatatta
-35
TGTAAAC
-10
ATTATA
Enterobacteria phage T4
PnrdC.4
promoter
Enterobacteria phage T4 early promoter
experimental
DNase1 footprinting
EMSA - gel shift
Primer extension
Promoter probe vectors
Run-off transcription assay
caaatgaaacggtgttcctacaccatattacaagaat
-35
AGTAAAC
-10
ATTATA
+1
T
Enterobacteria phage T4
P54.0
promoter
Enterobacteria phage T4 early promoter
experimental
caaatgttctggcaaggagacaccatgata
-35
TGTAAAC
-10
ATAGTA
Enterobacteria phage T4
P54.4
promoter
Enterobacteria phage T4 early promoter
experimental
EMSA - gel shift
Primer extension
Promoter probe vectors
caaatgttcgtatttcgaaataccatgata
-35
TGTAAAC
-10
ATAGTA
Enterobacteria phage T4
tnrdC.11
terminator
Rho-independent transcriptional terminator
predicted
ccctcggaagcccgaggg
stem_1
GGCTCCC
stem_2
GGGAGCC
Enterobacteria phage T4
P57.9
promoter
Enterobacteria phage T4 early promoter
experimental
EMSA - gel shift
Primer extension
Promoter probe vectors
caaatgaaaggcaaactcgacaccatgata
-35
AGTAAAC
-10
ATAGTA
Enterobacteria phage T4
trI.-1
terminator
Rho-independent transcriptional terminator
predicted
cagaggaagccctctg
stem_1
GGAGAC
stem_2
GTCTCC
Enterobacteria phage T4
Ptk.-1
promoter
Enterobacteria phage T4 late promoter
experimental
N/A
ttttcgagccaatcacgttttcaatatttat
-10
TATTTATA
Enterobacteria phage T4
P59.5
promoter
Enterobacteria phage T4 early promoter
predicted
atttcgacttttactaaatctttgtataaat
-10
TAAATA
Enterobacteria phage T4
P59.6
promoter
Enterobacteria phage T4 early promoter
predicted
aatgagcgcttgttttcttgctttataata
-35
GAGTAA
-10
ATAATA
Enterobacteria phage T4
P59.7
promoter
Enterobacteria phage T4 early promoter
predicted
tatttcttgttcttgagtaactaatatattt
-10
TTTATA
Enterobacteria phage T4
tvs
terminator
Rho-independent transcriptional terminator
predicted
cccgctataacagcggg
stem_1
CGCCC
stem_2
GGGCG
Enterobacteria phage T4
Pvs
promoter
Enterobacteria phage T4 middle promoter
experimental
DNase1 footprinting
EMSA - gel shift
Primer extension
gttctcaattccttgaaccaatatta
-35
TAACTCTTG
-10
ATTATA
Enterobacteria phage T4
P62.2
promoter
Enterobacteria phage T4 early promoter
experimental
EMSA - gel shift
Primer extension
Promoter probe vectors
caaatgaaaaggagaactgacaccatatta
-35
AGTAAAC
-10
ATTATA
Enterobacteria phage T4
PdenV
promoter
Enterobacteria phage T4 early promoter
experimental
DNase1 footprinting
EMSA - gel shift
Primer extension
Promoter probe vectors
Run-off transcription assay
caaatgtagaggacatccatactatgata
-35
TGTAAAC
-10
ATAGTA
Enterobacteria phage T4
P65.0
promoter
Enterobacteria phage T4 early promoter
experimental
Primer extension
S1 mapping
caaatgttgaggatcttaacacttatataa
-35
TGTAAAC
-10
AATATA
Enterobacteria phage T4
P65.1
promoter
Enterobacteria phage T4 early promoter
predicted
aacgattacgtcgggcaccattaagaattatt
-35
TAGCAA
-10
TTATTA
Enterobacteria phage T4
P65.5
promoter
Enterobacteria phage T4 early promoter
predicted
aagtgttaatgaacttatctgttaatgatt
-35
TGTGAA
-10
TTAGTA
Enterobacteria phage T4
p65.6
promoter
Enterobacteria phage T4 early promoter
experimental
EMSA - gel shift
Primer extension
Promoter probe vectors
caaatgaaagagaaccttaacactatcata
-35
AGTAAAC
-10
ATACTA
Enterobacteria phage T4
P65.7/1
promoter
Enterobacteria phage T4 early promoter
predicted
aaatcttgaccgtgaaccctgcgcatattt
-35
TCTAAA
-10
TTTATA
Enterobacteria phage T4
P65.7/2
promoter
Enterobacteria phage T4 early promoter
predicted
aattgaatcgattttcatataccatatta
-35
AGTTAA
-10
ATTATA
Enterobacteria phage T4
Pe(2)
promoter
Enterobacteria phage T4 late promoter
experimental
N/A
gaaaattaaaatatttatggaagatatttat
-10
TATTTATA
Enterobacteria phage T4
Pe(1)
promoter
Enterobacteria phage T4 late promoter
experimental
N/A
attacttgttggagaaaattaaaatatttat
-10
TATTTATA
Enterobacteria phage T4
Pe(w)
promoter
Enterobacteria phage T4 late promoter
experimental
N/A
tggaagatcttctggatccacataaatttat
-10
TATTTAAA
Enterobacteria phage T4
Pe.1
promoter
experimental
DNase1 footprinting
EMSA - gel shift
Promoter probe vectors
ttactaaaatttttgagcgaccatacta
-35
AAAATCATT
-10
ATCATA
Enterobacteria phage T4
te.6
terminator
Rho-independent transcriptional terminator
predicted
ccccgaagccgggg
stem_1
GCCCC
stem_2
GGGGC
Enterobacteria phage T4
P69.9
promoter
Enterobacteria phage T4 early promoter
experimental
N/A
caaatgttagataatctttgcactataata
-35
TGTAAAC
-10
ATAATA
Enterobacteria phage T4
P69.4
promoter
Enterobacteria phage T4 early promoter
experimental
N/A
caaatgtatccgastactaactctataata
-35
TGTAAAC
-10
ATAATA
Enterobacteria phage T4
P69.8
promoter
Enterobacteria phage T4 early promoter
experimental
EMSA - gel shift
Primer extension
Promoter probe vectors
caaatgtaggaacaagaaggtaccatgata
-35
TGTAAAC
-10
ATAGTA
Enterobacteria phage T4
trRNA C
terminator
Rho-independent transcriptional terminator
predicted
cggggctggctttccaaccccg
stem_1
GGTCGGGGC
stem_2
GCCCCAACC
Enterobacteria phage T4
PtRNAsc1
promoter
Enterobacteria phage T4 middle promoter
experimental
Primer extension
S1 mapping
atacgaaattcttaataaacaataataattgagt
-35
TAAAGCATA
-10
ATAATA
+1
T
Enterobacteria phage T4
PtRNA
promoter
Enterobacteria phage T4 late promoter
experimental
N/A
ttcatagtaggcaacttttacctatatttat
-10
TATTTATA
Enterobacteria phage T4
PtRNA.4
promoter
Enterobacteria phage T4 early promoter
experimental
DNase1 footprinting
EMSA - gel shift
Run-off transcription assay
caaatgtatcccaaaatcgacactatgataatgggat
-35
TGTAAAC
-10
ATAGTA
+1
T
Enterobacteria phage T4
P73.0
promoter
Enterobacteria phage T4 early promoter
experimental
EMSA - gel shift
Promoter probe vectors
caaatgtatgactactccatcactatgata
-35
TGTAAAC
-10
ATAGTA
Enterobacteria phage T4
P73.6
promoter
Enterobacteria phage T4 early promoter
predicted
aactatttaaattgagtccaatactaataata
-35
TATCAA
-10
ATAATA
Enterobacteria phage T4
P57A
promoter
Enterobacteria phage T4 middle promoter
experimental
Primer extension
S1 mapping
aaacgaaatctaatagaactatttaaattgagt
-35
TAAAGCAAA
-10
AATTTA
+1
T
Enterobacteria phage T4
P57A-late
promoter
Enterobacteria phage T4 late promoter
experimental
N/A
cgtaaattattctaatgactgcaatatttat
-10
TATTTATA
Enterobacteria phage T4
P1
promoter
Enterobacteria phage T4 middle promoter
experimental
Primer extension
S1 mapping
ttacgaagtcaaaacacacaatattagaattaat
-35
TGAAGCATT
-10
ATTATA
+1
TAA
Enterobacteria phage T4
P74.6 bacREV
promoter
Enterobacteria phage T4 early promoter
experimental
EMSA - gel shift
Promoter probe vectors
TTGACATCACGATTTCAGTTTTGCTATTATCTAAGAT
-35
TTGACA
-10
TATTAT
+1
T
Enterobacteria phage T4
P53
promoter
Enterobacteria phage T4 late promoter
experimental
N/A
AGAATATGCCATTGGATTCTCCTTATAAATA
-10
TATAAATA
Enterobacteria phage T4
P53(w)
promoter
Enterobacteria phage T4 late promoter
experimental
N/A
TCCTTATAAATAGATAATATATTTATAAACA
-10
TATAAACA
Enterobacteria phage T4
P4
promoter
Enterobacteria phage T4 late promoter
experimental
N/A
atttctcgtacccgggaggacaaatatttat
-10
TATTTATA
Enterobacteria phage T4
P5
promoter
Enterobacteria phage T4 late promoter
experimental
N/A
CTATGACAGATATTTTTAGAAACTATAAAGA
-10
TATAAAGA
Enterobacteria phage T4
P5R
promoter
Enterobacteria phage T4 middle promoter
experimental
DNase1 footprinting
EMSA - gel shift
Primer extension
ttgctaataggtacaatattatttaa
-35
ATAATCGTT
-10
AATTTA
Enterobacteria phage T4
p5R'
promoter
Enterobacteria phage T4 middle promoter
experimental
DNase1 footprinting
EMSA - gel shift
Primer extension
ctacatttgctaataggtacaatatta
-35
GTTTACATC
-10
ATTATA
Enterobacteria phage T4
P5.1
promoter
Enterobacteria phage T4 late promoter
experimental
N/A
GAAACAGGTGAAACGTTAGTATCTATAAATA
-10
TATAAATA
Enterobacteria phage T4
t5.4
terminator
Rho-independent transcriptional terminator
predicted
cggtacacaaagtatgccg
stem_1
CACATGGC
stem_2
GCCGTATG
Enterobacteria phage T4
t5.4/6
terminator
Rho-independent transcriptional terminator
predicted
TTGATGGAAACACTGAA
stem_1
TTGATG
stem_2
CACTGAA
Enterobacteria phage T4
P8
promoter
Enterobacteria phage T4 late promoter
experimental
N/A
TTAAACATACAGAGACTATAATTAATAAATA
-10
AATAAATA
Enterobacteria phage T4
P9(a)
promoter
Enterobacteria phage T4 late promoter
experimental
N/A
TTTGAGATTCCGCCTGATGTATCTATAAATA
-10
TATAAATA
Enterobacteria phage T4
t8
terminator
Rho-independent transcriptional terminator
predicted
GGGAGCCCATGGGCTCCC
stem_1
GGGAGCC
stem_2
GGCTCCC
Enterobacteria phage T4
p9(b)
promoter
Enterobacteria phage T4 late promoter
experimental
N/A
AGCCCATGGGCTCCCTTTTTCTTTATAAATA
-10
TATAAATA
Enterobacteria phage T4
P10
promoter
Enterobacteria phage T4 late promoter
experimental
N/A
GGAAGAAAAATTAAAACAGCAGAAATAAATA
-10
AATAAATA
Enterobacteria phage T4
twac
terminator
Rho-independent transcriptional terminator
predicted
GGGGCCGCAAGGCCCC
stem_1
GGGGCC
stem_2
GGCCCC
Enterobacteria phage T4
P15
promoter
Enterobacteria phage T4 late promoter
experimental
N/A
ATTTGACAATGATTTCATGGATTAATAAATA
-10
AATAAATA
Enterobacteria phage T4
P17
promoter
Enterobacteria phage T4 late promoter
experimental
N/A
GTAAAACAAACTTTCACTAGTAATGTAAATA
-10
TGTAAATA
Enterobacteria phage T4
P18(w)
promoter
Enterobacteria phage T4 late promoter
experimental
N/A
ATAAGCCTGAATTATTTCAAACTTATAAAGA
-10
TATAAAGA
Enterobacteria phage T4
P18
promoter
Enterobacteria phage T4 late promoter
experimental
N/A
AGTATCTCATGGTATGTCAATGGTATAAATA
-10
TATAAATA
Enterobacteria phage T4
P19(a)
promoter
Enterobacteria phage T4 late promoter
experimental
N/A
TAAAGGCCTGTTTCGGCAGGCCATATAAATA
-10
TATAAATA
Enterobacteria phage T4
P19(b)
promoter
Enterobacteria phage T4 late promoter
experimental
N/A
ATGCCCTAGGTTAAACATAGGGATATAAATA
-10
TATAAATA
Enterobacteria phage T4
t19
terminator
Rho-independent transcriptional terminator
predicted
GGGGAGAAATCCCC
stem_1
GGGGA
stem_2
TCCCC
Enterobacteria phage T4
P20
promoter
Enterobacteria phage T4 late promoter
experimental
N/A
CTGCTTAAAGCAGAGAAGTCCATTATAAATA
-10
TATAAATA
Enterobacteria phage T4
P67
promoter
Enterobacteria phage T4 late promoter
experimental
N/A
ACAGAAGATGAGTGGAATGATGAAATAAATA
-10
AATAAATA
Enterobacteria phage T4
P21
promoter
Enterobacteria phage T4 late promoter
experimental
N/A
TCTTCTGCTTTAAATAAAGACGATATAAATA
-10
TATAAATA
Enterobacteria phage T4
P22
promoter
Enterobacteria phage T4 late promoter
experimental
N/A
CGCAGAGGCCATGAAAAAAGCGTTATAAATA
-10
TATAAATA
Enterobacteria phage T4
P23(w)
promoter
Enterobacteria phage T4 late promoter
experimental
N/A
TCGTAGAAATGGTGAAGAAATCTAATAAAGA
-10
AATAAAGA
Enterobacteria phage T4
P23
promoter
Enterobacteria phage T4 late promoter
experimental
N/A
GATGAAAGCACTATTACTGAGAGTATAAATA
-10
TATAAATA
Enterobacteria phage T4
t23
terminator
Rho-independent transcriptional terminator
predicted
GGGAACCTTCGGGTTCCC
stem_1
GGGAACC
stem_2
GGTTCCC
Enterobacteria phage T4
P106.0
promoter
Enterobacteria phage T4 early promoter
experimental
aaatgttctggtttcattatactataata
-35
TGTAAA
-10
ATAATA
Enterobacteria phage T4
P24
promoter
Enterobacteria phage T4 late promoter
experimental
N/A
TACTTTGGTCTTGTAAATAACTTTATAAATA
-10
TATAAATA
Enterobacteria phage T4
t24(a)
terminator
Rho-independent transcriptional terminator
predicted
GGGACCTTTCGGTCCC
stem_1
GGGACC
stem_2
GGTCCC
Enterobacteria phage T4
t24(b)
terminator
Rho-independent transcriptional terminator
predicted
GTACATCTTGTAC
stem_1
GTACA
stem_2
TGTAC
Enterobacteria phage T4
Panti-late
promoter
Enterobacteria phage T4 middle promoter
experimental
DNase1 footprinting
EMSA - gel shift
Primer extension
aatctaagacagcaggttctaatatta
-35
AGAATCTAA
-10
ATTATA
Enterobacteria phage T4
thoc
terminator
Rho-independent transcriptional terminator
predicted
ccccgaagccgggg
stem_1
GCCCC
stem_2
GGGGC
Enterobacteria phage T4
Phoc.2
promoter
Enterobacteria phage T4 late promoter
experimental
N/A
TATCTATCATAATATTTCCTCAGTATAAATA
-10
TATAAATA
Enterobacteria phage T4
Phoc.1
promoter
Enterobacteria phage T4 late promoter
experimental
N/A
caccatgtatgataaaaggctcattatttat
-10
TATTTATT
Enterobacteria phage T4
PuvsW
promoter
Enterobacteria phage T4 late promoter
experimental
N/A
ACTTTTTGGGTCAATAATGGCGCAATAAATA
-10
AATAAATA
Enterobacteria phage T4
tuvsY.-2
terminator
Rho-independent transcriptional terminator
predicted
ccgggaaggaaaaaccaacccgg
stem_1
GGAAGGGCC
stem_2
GGCCCAACC
Enterobacteria phage T4
PuvsW.1
promoter
Enterobacteria phage T4 late promoter
experimental
N/A
gtaactatacgtatactctcaacatatttat
-10
TATTTATA
Enterobacteria phage T4
PuvsY
promoter
Enterobacteria phage T4 middle promoter
experimental
Primer extension
S1 mapping
ttacgaagtgcaattttgcaccatattacttagat
-35
TGAAGCATT
-10
ATTATA
+1
TA
Enterobacteria phage T4
P25(w)
promoter
Enterobacteria phage T4 late promoter
experimental
N/A
ctatttatttcctcgatttatacatacttat
-10
TATTCATA
Enterobacteria phage T4
P51
promoter
Enterobacteria phage T4 late promoter
experimental
N/A
TTAGCTCCTTTATTTATCATATTTATAAATA
-10
TATAAATA
Enterobacteria phage T4
P26(w)
promoter
Enterobacteria phage T4 late promoter
experimental
N/A
ggaaaataagataaatatttatactatttat
-10
TATTTATC
Enterobacteria phage T4
P26(a)
promoter
Enterobacteria phage T4 late promoter
experimental
N/A
tatctacgaggaaaataagataaatatttat
-10
TATTTATA
Enterobacteria phage T4
P115.8
promoter
Enterobacteria phage T4 early promoter
experimental
aaatgaataacttaaattcgatatta
-35
AGTAAA
-10
ATTATA
Enterobacteria phage T4
t54
terminator
Rho-independent transcriptional terminator
predicted
TGGGGACCGAAAGGTCCATA
stem_1
TGGGGACC
stem_2
GGTCCATA
Enterobacteria phage T4
Palt
promoter
Enterobacteria phage T4 late promoter
experimental
N/A
tttccggaagcccggaaattaaaatatttat
-10
TATTTATA
Enterobacteria phage T4
talt.1
terminator
Rho-independent transcriptional terminator
predicted
ccggaagcccgg
stem_1
GGCC
stem_2
GGCC
Enterobacteria phage T4
P125.9
promoter
Enterobacteria phage T4 early promoter
predicted
aactgactcgaattactacttaactaaatatta
-35
AGTCAA
-10
ATTATA
Enterobacteria phage T4
P128.2
promoter
Enterobacteria phage T4 early promoter
experimental
EMSA - gel shift
Promoter probe vectors
caaatgaaaccatgtcctatactataata
-35
AGTAAAC
-10
ATAATA
Enterobacteria phage T4
P128.6
promoter
Enterobacteria phage T4 early promoter
experimental
EMSA - gel shift
Promoter probe vectors
caaatgtcatatcaaggaaacactatcata
-35
TGTAAAC
-10
ATACTA
Enterobacteria phage T4
t30.9(a)
terminator
Rho-independent transcriptional terminator
predicted
cctgaggaagccctcagg
stem_1
GGAGTCC
stem_2
GGACTCC
Enterobacteria phage T4
t30.9(b)
terminator
Rho-independent transcriptional terminator
predicted
gctctactacgaagagc
stem_1
CATCTCG
stem_2
CGAGAAG
Enterobacteria phage T4
P31.-1
promoter
Enterobacteria phage T4 late promoter
experimental
N/A
gataaggcacagaaatattcactatatttat
-10
TATTTATA
Enterobacteria phage T4
Pcd
promoter
Enterobacteria phage T4 middle promoter
experimental
DNase1 footprinting
EMSA - gel shift
Primer extension
S1 mapping
tgatactacttaaattgactatatta
-35
CATCATAGT
-10
ATTATA
Enterobacteria phage T4
P131.7
promoter
Enterobacteria phage T4 early promoter
experimental
EMSA - gel shift
Promoter probe vectors
caaatgaaatgccatctcaacactataata
-35
AGTAAAC
-10
ATAATA
Enterobacteria phage T4
Pcd.3
promoter
Enterobacteria phage T4 middle promoter
experimental
DNase1 footprinting
EMSA - gel shift
Primer extension
tttctaaatagcagaaacactatttta
-35
ATAAATCTTT
-10
ATTTTA
Enterobacteria phage T4
PpseT.1
promoter
Enterobacteria phage T4 middle promoter
experimental
DNase1 footprinting
EMSA - gel shift
Primer extension
ttactaatttgatagtcgtcattata
-35
TTAATCATT
-10
ATATTA
Enterobacteria phage T4
P134.4
promoter
Enterobacteria phage T4 early promoter
experimental
EMSA - gel shift
Promoter probe vectors
caaatgttcagggagcacaacacaatatca
-35
TGTAAAC
-10
ACTATA
Enterobacteria phage T4
Panti-63
promoter
Enterobacteria phage T4 late promoter
experimental
N/A
ATACGGACGAAGAGTAGCATCTTTATAAATA
-10
TATAAATA
Enterobacteria phage T4
tnrdB
terminator
Rho-independent transcriptional terminator
predicted
acccggcgttccgggt
stem_1
GGCCCA
stem_2
TGGGCC
Enterobacteria phage T4
PnrdBin
promoter
Enterobacteria phage T4 middle promoter
experimental
Primer extension
Promoter probe vectors
aaacgaacgtggaaattaatcatattatatttat
-35
GCAAGCAAA
-10
ATTATA
+1
T
Enterobacteria phage T4
PnrdB.iI
promoter
Enterobacteria phage T4 late promoter
experimental
N/A
cgaacgtggaaattaatcatattatatttat
-10
TATTTATA
Enterobacteria phage T4
PnrdB
promoter
Enterobacteria phage T4 middle promoter
experimental
Primer extension
S1 mapping
gcacgaattaggctacataccatgttaaagaggc
-35
TTAAGCACG
-10
ATTGTA
+1
C
Enterobacteria phage T4
tnrdA
terminator
Rho-independent transcriptional terminator
predicted
aagggctcgagtccgagccctt
stem_1
GCTCGGGAA
stem_2
TTCCCGAGC
Enterobacteria phage T4
PnrdA
promoter
Enterobacteria phage T4 middle promoter
experimental
DNase1 footprinting
EMSA - gel shift
Primer extension
ttggtttcggcacagtaccactatattatcgagtat
-35
GCTTTGGTT
-10
ATTATA
+1
T
+1
T
Enterobacteria phage T4
P141.0
promoter
Enterobacteria phage T4 early promoter
experimental
S1 mapping
aacttaataagttttttctaaaatatgcagcttaat
-35
ATTCAA
-10
CGTATA
+1
T
Enterobacteria phage T4
PI-TevI
promoter
Enterobacteria phage T4 late promoter
experimental
N/A
gatttaacatcctgaacgggaaattatttat
-10
TATTTATT
Enterobacteria phage T4
Ptd
promoter
Enterobacteria phage T4 middle promoter
experimental
DNase1 footprinting
EMSA - gel shift
Primer extension
ttaccaactttgcgtaaccatattttatctacttc
-35
TCAACCATT
-10
ATTTTA
+1
C
Enterobacteria phage T4
P144.6
promoter
Enterobacteria phage T4 early promoter
experimental
EMSA - gel shift
Promoter probe vectors
caaatgttcgtatttcgaaataccatgata
-35
TGTAAAC
-10
ATAGTA
Enterobacteria phage T4
t32
terminator
Rho-independent transcriptional terminator
predicted
ccctgggatctccaggg
stem_1
GGTCCC
stem_2
GGGACC
Enterobacteria phage T4
P144.8 REV
promoter
Enterobacteria phage T4 early promoter
experimental
Linker scanning mutations
TAGGGTCCCCAATTAATTAGTAATATAAT
-35
TAGGGT
-10
TATAAT
Enterobacteria phage T4
P145.7
promoter
Enterobacteria phage T4 early promoter
experimental
Promoter probe vectors
RNase protection assay
aacgcttaatacggtcgatactccatttca
-35
TCGCAA
-10
ACTTTA
Enterobacteria phage T4
P32(late)
promoter
Enterobacteria phage T4 late promoter
experimental
N/A
cctaccgcttctcaatttccattatatttat
-10
TATTTATA
Enterobacteria phage T4
P32
promoter
Enterobacteria phage T4 middle promoter
experimental
Promoter probe vectors
RNase protection assay
taacgaatgctcttaatacacaataata
-35
GTAAGCAAT
-10
ATAATA
Enterobacteria phage T4
P147.1
promoter
Enterobacteria phage T4 early promoter
experimental
aacgatttaaataaggaagcccatatta
-35
TAGCAA
-10
ATTATA
Enterobacteria phage T4
PdsbA
promoter
Enterobacteria phage T4 middle promoter
experimental
taacgaagtttgtaacacttaatgatattaagtata
-35
TGAAGCAAT
-10
ATAGTA
+1
A
+1
A
Enterobacteria phage T4
P147.7/1
promoter
Enterobacteria phage T4 early promoter
experimental
aacgaagtttgtaacacttaatgatatta
-35
AAGCAA
-10
ATTATA
Enterobacteria phage T4
P147.7/2
promoter
Enterobacteria phage T4 early promoter
experimental
aactaaaactaatataaggactattata
-35
AATCAA
-10
ATATTA
Enterobacteria phage T4
P148.6
promoter
Enterobacteria phage T4 early promoter
experimental
EMSA - gel shift
Promoter probe vectors
caaatgaaattctaaacctaccatatatta
-35
AGTAAAC
-10
ATTATA
Enterobacteria phage T4
P34
promoter
Enterobacteria phage T4 late promoter
experimental
N/A
ATCCAAATCTTAAAGTAAACAAGTATAAATA
-10
TATAAATA
Enterobacteria phage T4
P34i
promoter
Enterobacteria phage T4 middle promoter
experimental
Primer extension
S1 mapping
aaacgaagttcttataattcacatattaccagggtc
-35
TGAAGCAAA
-10
ATTATA
+1
CTG
Enterobacteria phage T4
t34/35
terminator
Rho-independent transcriptional terminator
predicted
GGCCGAGTTTGGACAAGGATATGTCCAAACGCC
stem_1
GGCCGAGTTTGGACA
stem_2
TGTCCAAACGCC
Enterobacteria phage T4
t35
terminator
Rho-independent transcriptional terminator
predicted
GGGACCCTTCGGGTTCCC
stem_1
GGGACCC
stem_2
GGTTCCC
Enterobacteria phage T4
P36
promoter
Enterobacteria phage T4 late promoter
experimental
N/A
ACCCTTCGGGTTCCCTTTTTCTTTATAAATA
-10
TATAAATA
Enterobacteria phage T4
P37
promoter
Enterobacteria phage T4 late promoter
experimental
N/A
AGAAAGGACTATGTTGATGGAGCAATAAATA
-10
AATAAATA
Enterobacteria phage T4
t37
terminator
Rho-independent transcriptional terminator
predicted
GGGCTTCGGCCC
stem_1
GGGC
stem_2
GCCC
Enterobacteria phage T4
Pt
promoter
Enterobacteria phage T4 late promoter
experimental
N/A
TAAGCGTTTATTCAAGCATTACGTATAAATA
-10
TATAAATA
Enterobacteria phage T4
tt
terminator
Rho-independent transcriptional terminator
predicted
CCCTCGTTGAATTCGTCGATGAGGG
stem_1
CCCTCGTTGAA
stem_2
TCGATGAGGG
Enterobacteria phage T4
P158.7
promoter
Enterobacteria phage T4 early promoter
experimental
EMSA - gel shift
Promoter probe vectors
caaatgtttagttcgcagactactataata
-35
TGTAAAC
-10
ATAATA
Enterobacteria phage T4
PmotA
promoter
Enterobacteria phage T4 early promoter
experimental
DNase1 footprinting
EMSA - gel shift
Primer extension
Promoter probe vectors
Run-off transcription assay
caaatgttggtttcgtatgacaccatgatatgttgat
-35
TGTAAAC
-10
ATAGTA
+1
T
Enterobacteria phage T4
tmotA.1
terminator
Rho-independent transcriptional terminator
predicted
ccctctcggctccgagaggg
stem_1
GCTCTCCC
stem_2
GGGAGAGC
Enterobacteria phage T4
tac
terminator
Rho-independent transcriptional terminator
predicted
cccgataagtaatcggg
stem_1
TAGCCC
stem_2
GGGCTA
Enterobacteria phage T4
tstp
terminator
Rho-independent transcriptional terminator
predicted
GGCGTCCGAAGACGCC
stem_1
GGCGTC
stem_2
GACGCC
Enterobacteria phage T4
P164.2
promoter
Enterobacteria phage T4 early promoter
experimental
caaatgttctgacaagaaggcaccatgata
-35
TGTAAAC
-10
ATAGTA
Enterobacteria phage T4
P164.5
promoter
Enterobacteria phage T4 early promoter
experimental
EMSA - gel shift
Promoter probe vectors
caaatgtatggtgttcctggcaccatgata
-35
TGTAAAC
-10
ATAGTA
Enterobacteria phage T4
tdenB.1
terminator
Rho-independent transcriptional terminator
predicted
cccgaagccgga
stem_1
GCCC
stem_2
AGGC
Enterobacteria phage T4
trIIB
terminator
Rho-independent transcriptional terminator
predicted
attccgaagccgggaat
stem_1
GCCTTA
stem_2
TAAGGGC
Enterobacteria phage T7
CJ
terminator
Lyzozyme dependent terminator of late genes
experimental
ATCTGTT
Enterobacteria phage T7
A0(D)
promoter
T7 minor leftward early promoter for host RNA polymerase
experimental
aactgaactacccagaaatccacatccgaaatccac
-35
AGTCAA
-10
AGCCTA
+1
C
Enterobacteria phage T7
phiOL
promoter
Bacteriophage T7 phiOL promoter for T7 RNA polymerase
experimental
TAATACAACTCACTATAA
-10
TAATA
+1
A
Enterobacteria phage T7
A1
promoter
T7 major early promoter for host RNA polymerase
experimental
TTGACTTAAAGTCTAACCTATAGGATACTTACAGCCA
-35
TTGACT
-10
GATACT
+1
A
Enterobacteria phage T7
A2
promoter
T7 major early promoter for host RNA polymerase
experimental
TTGACAACATGAAGTAACATGCAGTAAGATACAAATCG
-35
TTGACA
-10
TAAGAT
+1
G
Enterobacteria phage T7
A3
promoter
T7 major early promoter for host RNA polymerase
experimental
TTGACAACATGAAGTAAACACGGTACGATGTACCACA
-35
TTGACA
-10
TACGAT
+1
A
Enterobacteria phage T7
B
promoter
T7 minor early promoter for host RNA polymerase
predicted
TTTACTTATGAGGGAGTAATGTATATGCT
-35
TTTACT
-10
TATGCT
Enterobacteria phage T7
C
promoter
T7 minor early promoter for host RNA polymerase
experimental
TTGACGCAATGTTAATGGGCTGATAGTCTTATCTTA
-35
TTGACG
-10
TAGTCT
+1
A
Enterobacteria phage T7
phi1.1A
promoter
Bacteriophage T7 phi1.1A promoter for T7 RNA polymerase
experimental
CAATACGACTCACTATAG
-10
CAATA
+1
G
Enterobacteria phage T7
phi1.1B
promoter
Bacteriophage T7 phi1.1B promoter for T7 RNA polymerase
experimental
TAATACGACTCACTATAG
-10
TAATA
+1
G
Enterobacteria phage T7
phi1.3
promoter
Bacteriophage T7 phi1.3 promoter for T7 RNA polymerase
experimental
TAATACGACTCAGTATAG
-10
TAATA
+1
G
Enterobacteria phage T7
TE
terminator
Bacteriophage T7 rho-independent transcriptional terminator TE
predicted
GGCTCACCTTCGGGTGGGCC
stem_1
GGCTCACC
stem_2
GGTGGGCC
Enterobacteria phage T7
phi1.5
promoter
Bacteriophage T7 phi1.5 promoter for T7 RNA polymerase
experimental
TAATACGACTCACTAAAG
-10
TAATA
+1
G
Enterobacteria phage T7
phi1.6
promoter
Bacteriophage T7 phi1.6 promoter for T7 RNA polymerase
experimental
TAATACGACTCACTAAAG
-10
TAATA
+1
G
Enterobacteria phage T7
phi2.5
promoter
Bacteriophage T7 phi2.5 promoter for T7 RNA polymerase
experimental
TAATACGACTCACTATTA
-10
TAATA
+1
A
Enterobacteria phage T7
phi3.8
promoter
Bacteriophage T7 phi3.8 promoter for T7 RNA polymerase
experimental
TAATTGAACTCACTAAAG
-10
TAATT
+1
G
Enterobacteria phage T7
phi4c
promoter
Bacteriophage T7 phi4c promoter for T7 RNA polymerase
experimental
CAATCCGACTCACTAAAG
-10
CAATC
+1
G
Enterobacteria phage T7
phi4.3
promoter
Bacteriophage T7 phi4.3 promoter for T7 RNA polymerase
experimental
TAATACGACTCACTAAAG
-10
TAATA
+1
G
Enterobacteria phage T7
phi4.7
promoter
Bacteriophage T7 phi4.7 promoter for T7 RNA polymerase
experimental
CTATTCGACTCACTATAG
-10
CTATT
+1
G
Enterobacteria phage T7
phi6.5
promoter
Bacteriophage T7 phi6.5 promoter for T7 RNA polymerase
experimental
TAATACGACTCACTATAG
-10
TAATA
+1
G
Enterobacteria phage T7
phi9
promoter
Bacteriophage T7 phi9 promoter for T7 RNA polymerase
experimental
TAATACGACTCACTATAG
-10
TAATA
+1
G
Enterobacteria phage T7
phi10
promoter
Bacteriophage T7 phi10 promoter for T7 RNA polymerase
experimental
TAATACGACTCACTATAG
-10
TAATA
+1
G
Enterobacteria phage T7
Tphi
terminator
Bacteriophage T7 rho-independent major transcriptional terminator
predicted
AACCCCTTGGGGCCTCTAAACGGGTCTTGAGGGGTT
stem_1
AACCCCTTGGGGCC
stem_2
GGGTCTTGAGGGGTT
Enterobacteria phage T7
phi13
promoter
Bacteriophage T7 phi13 promoter for T7 RNA polymerase
experimental
TAATACGACTCACTATAG
-10
TAATA
+1
G
Enterobacteria phage T7
phi17
promoter
Bacteriophage T7 phi17 promoter for T7 RNA polymerase
experimental
TAATACGACTCACTATAG
-10
TAATA
+1
G
Enterobacteria phage T7
E
promoter
T7 minor early promoter for host RNA polymerase
experimental
TTAACGGGAGGCATTATGCTAGAATTTT
-35
TTAAC
-10
AATTTT
Enterobacteria phage T7
phiOR
promoter
Bacteriophage T7 phiOR promoter for T7 RNA polymerase
experimental
TAATACGACTCACTATAG
-10
TAATA
+1
G
Enterobacteria phage VT2-Sakai
pL
promoter
phage VT2-Sa pL promoter
predicted
aactggttcacttcatgtatagcatgata
-10
ATAGTA
-35
GGTCAA
Enterobacteria phage VT2-Sakai
ORL
operator
phage VT2-Sa left operator region
experimental
TAGTACGATATGTACTTCACTTGGTCAATACAATTTGTTCTAAAACGGGGCGTTTTTTTACAACGCTTTGTATTT
O_1
TAGTACGATATGTACTT
O_2
CAATACAATTTGTTCTA
O_3
TACAACGCTTTGTATTT
Enterobacteria phage VT2-Sakai
pRM
promoter
phage VT2-Sa pRM promoter
predicted
acctaccaaggtcatgtctcgcattatta
-10
ATTATT
-35
CATCCA
Enterobacteria phage VT2-Sakai
ORR
operator
phage VT2-Sa right operator region
experimental
TATTACGCTCTGTACTGGAACCATCCATGCACAATGTGTATTTTTACTTGTATTTGAGAAGTACATATTGTATTT
O_1
AAGTACATATTGTATTT
O_2
ATGCACAATGTGTATTT
O_3
TATTACGCTCTGTACTG
Enterobacteria phage VT2-Sakai
pR
promoter
phage VT2-Sa pR promoter
predicted
TTGTATTTGAGAAGTACATATTGTATTTT
-10
TATTTT
-35
TTGTAT
Enterobacteria phage VT2-Sakai
pRE
promoter
phage VT2-Sa pRE promoter
predicted
acattgaacaaacaaggtaaagaattcta
-10
ATCTTA
-35
GTTACA
Escherichia Stx1 converting bacteriophage
pL
promoter
Stx1 converting bacteriophage pL promoter
predicted
actggttcacttcatgtatagcatgata
-35
GGTCA
-10
ATAGTA
Escherichia Stx1 converting bacteriophage
OL
operator
Stx1 converting bacteriophage left operator region
predicted
TAGTACGATATGTACTTCACTTGGTCAATACAATTTGTTCTAAAACGGGGCGTTTTTTTACAACGCTTTGTATTT
O_1
TAGTACGATATGTACTT
O_2
CAATACAATTTGTTCTA
O_3
TACAACGCTTTGTATTT
Escherichia Stx1 converting bacteriophage
pRM
promoter
Stx1 converting bacteriophage pRM promoter
predicted
acctaccaaggtcatgtctcgcattattattcctgtact
-10
TCATGTCCTTATTATT
-35
CATCCA
Escherichia Stx1 converting bacteriophage
OR
operator
Stx1 converting bacteriophage right operator region
predicted
TATTACGCTCTGTACTGGAACCATCCATGCACAATGTGTATTTTTACTTGTATTTGAGAAGTACATATTGTATTT
O_1
AAGTACATATTGTATTT
O_2
ATGCACAATGTGTATTT
O_3
TATTACGCTCTGTACTG
Escherichia Stx1 converting bacteriophage
pR
promoter
Stx1 converting bacteriophage pR promoter
predicted
CTTGTATTTGAGAAGTACATATTGTATTT
-35
CTTGTA
-10
ATTT
Escherichia Stx1 converting bacteriophage
pAQ
promoter
Stx1 converting bacteriophage pAQ promoter
predicted
TTGCACATGGCACTATTAGTTTTCTAAATATT
-35
TTGCACA
-10
AATATT
Escherichia Stx1 converting bacteriophage
tR'
terminator
Putative rho-dependent terminator
predicted
GCCAGCCTCCCCCAGTGGCTGGCTTTTTTAT
Mycoplasma phage P1
P1
promoter
Mycoplasma virus P1 promoter
predicted
GCATGATACACCAAGGCAAGTTGTTGCTATTTTAGCCCCTC
-10
TATTTTA
-35
GCATGATACA
+1
C
Mycoplasma phage P1
Terminator
terminator
Mycoplasma virus P1 rho-independent transcription terminator
predicted
AAAATCTCCATAATGGAGATTTT
stem_1
AAAATCTCCA
stem_2
TGGAGATTTT
Mycoplasma phage P1
P2
promoter
Mycoplasma virus P2 promoter
predicted
actttttttattaattattgtagtttactaagaaatcgaaa
-10
TAAAGAA
-35
ATTTTTTTCA
+1
A
Mycoplasma phage P1
P3
promoter
Mycoplasma virus P1 P3 promoter
predicted
cgtactatgtggttccgttcaacaacgataaaatcggggag
-10
TAAAATA
-35
TGTATCATGC
+1
G
Pseudomonad phage gh-1
A1
promoter
Putative early promoter for host RNA polymerase
predicted
ATTGACACTGAGACCATCCATAGGCTATCGCGTGTGTGCGC
Pseudomonad phage gh-1
A2
promoter
Putative early promoter for host RNA polymerase
predicted
GTTGTTTACAACCATCGAGGATCAGTGTCTAATGGCTCCCATCAA
Pseudomonad phage gh-1
A3
promoter
Putative early promoter for host RNA polymerase
predicted
CTTGACAAGATGATGGAACGCTGTAGAATGGCCACCATCAACAA
Pseudomonad phage gh-1
phi1
promoter
Putative gh-1 RNAP promoter
predicted
TAAAAACCCTCACTGTGGCTGCA
Pseudomonad phage gh-1
A4
promoter
Putative gh-1 RNAP promoter
predicted
CTGCACACACTATGGGGGCTTTTATCTTAAAGACATCTCAAAGGT
Pseudomonad phage gh-1
phi2
promoter
Putative gh-1 RNAP promoter
predicted
ATGCAAGTCACTATCGCCGCT
Pseudomonad phage gh-1
phi3
promoter
Putative gh-1 RNAP promoter
predicted
GCGTCAAGGCCACTCAGGAACTC
Pseudomonad phage gh-1
phi4
promoter
Putative gh-1 RNAP promoter
predicted
TTAAAAACCCTCACTTTGGCTGCA
Pseudomonad phage gh-1
phi5
promoter
Putative gh-1 RNAP promoter
predicted
TTAAAAACCCTCACTGTGGCTGCA
Pseudomonad phage gh-1
phi6
promoter
Putative gh-1 RNAP promoter
predicted
TTTAAAAACCCTCACTGTGGCTCA
Pseudomonad phage gh-1
phi7
promoter
Putative gh-1 RNAP promoter
predicted
CATCACTGGCATCCA
Pseudomonad phage gh-1
phi8
promoter
Putative gh-1 RNAP promoter
predicted
CCACATGAAAGCACTGAAATCGTT
Pseudomonad phage gh-1
phi9
promoter
Putative gh-1 RNAP promoter
predicted
GCGCGAGTGCCACTAAGGAGAACC
Pseudomonad phage gh-1
phi10
promoter
Putative gh-1 RNAP promoter
predicted
TAAAAACCCTCACTATGGCCATAG
Pseudomonad phage gh-1
phi11
promoter
Putative gh-1 RNAP promoter
predicted
AGATGGCGAGCACTACGGACGTTC
Pseudomonad phage gh-1
phi12
promoter
Putative gh-1 RNAP promoter
predicted
TTTAAAACCCTCACTATGGCTGCA
Pseudomonad phage gh-1
phi13
promoter
Putative gh-1 RNAP promoter
predicted
TAAAAACCCTCACTATGGCTGCAT
Pseudomonad phage gh-1
phi14
promoter
Putative gh-1 RNAP promoter
predicted
TTACGAAGCAACACTCGAAACAGATGACGAACTCGCAGCCATCAACGACATGCTCGCAGCAATCGGTGAGTCCCCTGTGAGTTCCCTTGAGGGGGACCCTAACGCTGACGTGGCGAACGCTCGC
Pseudomonad phage gh-1
phi15
promoter
Putative gh-1 RNAP promoter
predicted
CAAAAACCCTCACTATGGCACCCTATGAGGGTTTCTTTATGATCTTGACAC
Pseudomonad phage gh-1
phi16
promoter
Putative gh-1 RNAP promoter
predicted
TAAAACCCCTCACTATGGCACCCT
Pseudomonad phage gh-1
phi17
promoter
Putative gh-1 RNAP promoter
predicted
TAAAAACCCTCACTATGGCCCAGA
Pseudomonas phage phiKMV
Promoter1
promoter
Bacteriophage phiKMV promoter
predicted
TTGACACGTGGGCGGCAGGTCTGTAGAGT
-35
TTGACA
-10
TAGAGT
Pseudomonas phage phiKMV
Promoter2
promoter
Bacteriophage phiKMV promoter
predicted
TTGACACACTACCAAGGCATCGGTAGAGT
-35
TTGACA
-10
TAGAGT
Pseudomonas phage phiKMV
Promoter3
promoter
Bacteriophage phiKMV promoter
predicted
CTGACACGGTGCAGGGCACGCGGTACAGT
-35
CTGACA
-10
TACAGT
Pseudomonas phage phiKMV
Promoter4
promoter
Bacteriophage phiKMV promoter
predicted
TTGACAAGACAAGCGCAAGTCTCTAACAT
-35
TTGACA
-10
TAACAT
Pseudomonas phage phiKMV
Tphi1
terminator
Bacteriophage phiKMV terminator Tphi1
predicted
GGCCCGGCCCTCCGGGCC
stem_1
GGCCCGG
stem_2
CCGGGCC
Pseudomonas phage phiKMV
Promoter5
promoter
Bacteriophage phiKMV promoter
predicted
CGTCTAAGCGACTGGGGCCTACTCCGGGGTCAAATCCG
Pseudomonas phage phiKMV
Promoter6
promoter
Bacteriophage phiKMV promoter
predicted
CGCCTGACGACCCTTCCCTACTCCGGCCTTAAATCTT
Pseudomonas phage phiKMV
Promoter7
promoter
Bacteriophage phiKMV promoter
predicted
TATCTAACGACCCTGCCCTACTCCGGCCTTAAACTCA
Pseudomonas phage phiKMV
Tphi2
terminator
Bacteriophage phiKMV terminator Tphi2
predicted
CCCGCGCAGATTCCCTGCGTGGG
stem_1
CCCGCGCAG
stem_2
CTGCGTGGG
Pseudomonas phage phiKMV
Tphi3
terminator
Bacteriophage phiKMV terminator Tphi3
predicted
AGTAGTTCAAGCCGAGCACCTGCATAGTCGGGTGCTCCACTGGAACTACT
Salmonella phage HK620
pX
promoter
Enterobacteria phage HK620 pX promoter
predicted
aactgtcggcgtgaggtactgcccattttt
-35
TGTCAA
-10
TTTTTA
Salmonella phage HK620
attP
att site
Attachment site of Enterobacteria phage HK620
experimental
ATGGTGTCCCCTGCAG
Salmonella phage HK620
pI
promoter
Enterobacteria phage HK620 pI promoter
predicted
aacggactaaacgtccaagctaaggga
-35
AGGCAA
-10
AGGGAA
Salmonella phage HK620
tL3
terminator
Enterobacteria phage HK620 tL3 terminator
predicted
ttcttaacgaattctctttaagaa
stem_1
AGCAATTCTT
stem_2
AAGAATTTCT
Salmonella phage HK620
tL2D
terminator
Enterobacteria phage HK620 tL2D terminator
predicted
tttgttgaaacaaa
stem_1
TTGTTT
stem_2
AAACAA
Salmonella phage HK620
tL2C
terminator
Enterobacteria phage HK620 tL2C terminator
predicted
tagcggtgaaaataaccgcta
stem_1
TGGCGAT
stem_2
ATCGCCA
Salmonella phage HK620
tL2B
terminator
Enterobacteria phage HK620 tL2B terminator
predicted
ttgcgaagtgctctccgcaa
stem_1
GAAGCGTT
stem_2
AACGCCTC
Salmonella phage HK620
tL2A
terminator
Enterobacteria phage HK620 tL2A terminator
predicted
cgggaggttacactcccg
stem_1
GAGGGC
stem_2
GCCCTC
Salmonella phage HK620
tL1
terminator
Enterobacteria phage HK620 tL1 terminator
predicted
aaccacatctagtggtt
stem_1
CACCAA
stem_2
TTGGTG
Salmonella phage HK620
pL
promoter
Enterobacteria phage HK620 pL promoter
predicted
aaatgtgttattttatggatgtcataaga
-35
TGTAAA
-10
AGAATA
Salmonella phage HK620
OL
operator
Enterobacteria phage HK620 OL operator
predicted
GAATACTGTAGGTATTTTATTGTGTAAATACCCAAGGTATTTATTTTTGATGAAATAATGATAA
O_1
GAATACTGTAGGTATTT
O_2
AAATACCCAAGGTATTT
O_3
TGATGAAATAATGATAA
Salmonella phage HK620
tIMM
terminator
Enterobacteria phage HK620 tIMM terminator
predicted
tttatttataggaaacataagtaaa
stem_1
TATTTATTT
stem_2
AAATGAATA
Salmonella phage HK620
OR
operator
Enterobacteria phage HK620 OR operator
predicted
TAATAGCTAAGGTACTTAAACTAAAAATACCCTGAGTATTGATTGCTTTGAATACCTGTAGTATTC
O_3
TAATAGCTAAGGTACTT
O_2
AAATACCCTGAGTATTG
O_1
GAATACCTGTAGTATTC
Salmonella phage HK620
pR
promoter
Enterobacteria phage HK620 pR promoter
predicted
TTGATTGCTTTGAATACCTGTAGTATTCT
-35
TTGATT
-10
TATTCT
Salmonella phage HK620
tR1
terminator
Enterobacteria phage HK620 tR1 terminator
predicted
GCGCATAAGTTGATGCGC
stem_1
GCGCAT
stem_2
ATGCGC
Salmonella phage HK620
pRE
promoter
Enterobacteria phage HK620 pRE promoter
predicted
aacgctcatgaacattcaacgtatacattcata
-35
TCGCAA
-10
ATACTT
Salmonella phage HK620
tR2
terminator
Enterobacteria phage HK620 tR2 terminator
predicted
GGCCTGCTGGTAATCGCAGGCC
stem_1
GGCCTGC
stem_2
GCAGGCC
Salmonella phage HK620
pR'
promoter
Enterobacteria phage HK620 pR' promoter
predicted
TTGACTTTTTGAATAAAGTTGGGTAAAT
-35
TTGACT
-10
TAAAT
Salmonella phage HK620
tQ
terminator
Enterobacteria phage HK620 tQ terminator
predicted
TGGGCTACAACCCTCAGCCCA
stem_1
TGGGCT
stem_2
AGCCCA
Salmonella phage HK620
tGP5
terminator
Putative enterobacteria phage HK620 tGP5 terminator
predicted
AAGGGGCTTACGCCCCTT
stem_1
AAGGGGC
stem_2
GCCCCTT
Salmonella phage HK620
tORF59A
terminator
Putative enterobacteria phage HK620 tORF59A terminator
predicted
AAGCCGGAGTGACCCGGCTT
stem_1
AAGCCGG
stem_2
CCGGCTT
Salmonella phage HK620
tMNT
terminator
Putative enterobacteria phage HK620 tMNT terminator
predicted
CCACCGTCAGGTGG
stem_1
CCACC
stem_2
GGTGG
Salmonella phage HK620
tANT
terminator
Putative enterobacteria phage HK620 tANT terminator
predicted
CCAGCTTCGGCTGG
stem_1
CCAGC
stem_2
GCTGG
Salmonella phage HK620
tJ
terminator
Putative enterobacteria phage HK620 tJ terminator
predicted
TCAAATACCGCGGTATTTGA
stem_1
TCAAATACCG
Salmonella phage HK620
tR'
terminator
Putative enterobacteria phage HK620 tR' terminator
predicted
GTAATTGATATTAC
stem_1
GTAAT
stem_2
ATTAC
Staphylococcus phage P68
PR1
promoter
Staphylococcus aureus phage phiP68 PR1 promoter
predicted
TTGACAAAACTTTTAAACGTTTGCTATACT
-10
TATACT
-35
TTGACA
Staphylococcus phage P68
PR2
promoter
Staphylococcus aureus phage phiP68 PR2 promoter
predicted
TTTACGTTTTTTAGAAAGGAGTGATATAAT
-10
TATAAT
-35
TTTACG
Staphylococcus phage P68
T1
terminator
Staphylococcus aureus phage phiP68 T1 transcriptional terminator
predicted
TCATTTTAATACAATTTCATAGGGGATACTTATCCCCTATTTTTTATGAGGTGTTTAAAT
Staphylococcus phage P68
PR3
promoter
Staphylococcus aureus phage phiP68 PR3 promoter
predicted
ATGAAGATGTGAGGTATAACTTTTTATATT
-10
TATATT
-35
ATGAAG
Staphylococcus phage P68
T2
terminator
Staphylococcus aureus phage phiP68 T2 transcriptional terminator
predicted
AACATGATGAAATAAAAAAAGGCAACTGTTAAAATAACAGTCGCCTTTTCTTTTTGAGAT
Staphylococcus phage P68
PL1
promoter
Staphylococcus aureus phage phiP68 PL1 promoter
predicted
aaataaacataattacaagcaactataata
-10
ATAATA
-35
AAATAAA
Staphylococcus phage P68
PL2
promoter
Staphylococcus aureus phage phiP68 PL2 promoter
predicted
ctcaattttgctatgttaattttccccata
-10
ATACCC
Staphylococcus phage P68
PL3
promoter
Staphylococcus aureus phage phiP68 PL3 promoter
predicted
aaggaaccccccacaagagtattacccata
-10
ATACCC
Staphylococcus phage P68
PL4
promoter
Staphylococcus aureus phage phiP68 PL4 promoter
predicted
tgcactattgaaatttctcggactcccata
-10
ATACCC
Staphylococcus phage P68
PL5
promoter
Staphylococcus aureus phage phiP68 PL5 promoter
predicted
aaatgaataaatttataagatactatatta
-10
ATTATA
-35
AGTAAA
Streptococcus phage Cp-1
PE1
promoter
Bacteriophage promoter
experimental
Primer extension
TTGACAATCATTTTAGTAAATGCTATAATGGTTATA
-35
TTGACA
-10
TATAAT
+1
A
Streptococcus phage Cp-1
PE2
promoter
Bacteriophage Cp-1 PE2 promoter
experimental
Primer extension
TTGACAAGCATTTTGAGAAATGCTATAATAGTATCA
-35
TTGACA
-10
TATAAT
+1
A
Streptococcus phage Cp-1
PE3
promoter
Bacteriophage Cp-1 PE3 promoter
experimental
Primer extension
TTGCTTTCTATTTGAAAATGTGGTAAACTTAAATA
-35
TTGCTT
-10
TAAACT
+1
A
Streptococcus phage Cp-1
Terminator
terminator
Bacteriophage Cp-1 transcriptional terminator
predicted
ACTCTCGGTTTACCGCTCCT
stem_1
ACTCTCGGTT
Streptococcus phage Cp-1
Terminator2
terminator
Bacteriophage Cp-1 transcriptional terminator
predicted
GAGCCTTCCCAATCGGGAAAGCTC
Streptococcus phage Cp-1
PL1
promoter
Bacteriophage Cp-1 PL1 promoter
experimental
Primer extension
TTCATGGCTTGAAAAGTCAGTTGGTTAGAATGACTCGCACCA
-35
TTCATG
-10
TAGAAT
+1
A
Streptococcus phage Cp-1
PL2
promoter
Bacteriophage Cp-1 PL2 promoter
experimental
Primer extension
TTACAGGTTTATCATATCATACTTGCTTTATTTTGTCA
-35
TTACAG
-10
TTTATT
+1
A
Streptococcus phage Cp-1
PL3
promoter
Bacteriophage Cp-1 PL3 promoter
experimental
Primer extension
TTGAGGAAGCCTAAAGGCTGACCAAGGGCGGGCAATAGCCCG
-35
TTGAGG
-10
GGCAAT
+1
G
Streptococcus phage Cp-1
PL4
promoter
Bacteriophage Cp-1 PL4 promoter
experimental
Primer extension
TTCAGATATTTAATATATGTGATAAGCTG
-35
TTCAGA
-10
GATAAG
+1
G
Streptococcus phage Cp-1
PL5
promoter
Bacteriophage Cp-1 PL5 promoter
experimental
Primer extension
AGGACAAGAATAAGGGAGGGTTTCAGCCCTCCTA
-35
AGGACA
-10
TTTCAG
+1
A
Streptococcus phage Cp-1
PL6
promoter
Bacteriophage Cp-1 PL6 promoter
experimental
Primer extension
ATGGCAGAAGCAACAGAAACGCTAAAAGCACT
-35
ATGGCA
-10
TAAAAG
+1
T
Streptococcus phage Cp-1
PL7
promoter
Bacteriophage Cp-1 PL7 promoter
experimental
Primer extension
AAAACAACCCGAATTTTTAAAAGTATGATATAATGAAATAG
-35
AAAACA
-10
TATAAT
+1
G
Streptococcus phage Cp-1
PL8
promoter
Bacteriophage Cp-1 PL8 promoter
experimental
Primer extension
TTGACCGCTTATTGTTTAGAAGTGGAACAGGTGGAAGACGGG
-35
TTGACC
-10
TGGAAC
+1
G
Streptococcus phage Cp-1
PL9
promoter
Bacteriophage Cp-1 PL9 promoter
experimental
Primer extension
TTTACGGAGTTTGTACTTAAAAAATATGTTTATTTATG
-35
TTTACG
-10
TATGTT
+1
G
Streptococcus phage Cp-1
PPR
promoter
Bacteriophage Cp-1 PPR promoter
experimental
Primer extension
TTAAGCGCTCATTTTTAAAATAGTTCTCATGGACTTCT
-35
TTAAGC
-10
TCTCAT
+1
T
Streptococcus phage Cp-1
PE5
promoter
S. pneumoniae phage Cp-1 PE5 promoter
experimental
Primer extension
aactgttcgtaaaactctttacgatattaccatagt
-35
TGTCAA
-10
ATTATA
+1
T
Streptococcus phage Cp-1
PE4
promoter
Bacteriophage Cp-1 PE4 promoter
experimental
Primer extension
aactgttagtaaaatattttactatgttacatatat
-10
ATTGTA
-35
TGTCAA
+1
T
Streptomyces phage phiC31
CIR8
operator
Streptomyces phage phiC31 palindromic operator site
experimental
CCTACTCACGTGAGTAG
Streptomyces phage phiC31
CIR10
operator
Streptomyces phage phiC31 palindromic operator site
experimental
CCTACTCACGTGAGTAG
Streptomyces phage phiC31
CIR11
operator
Streptomyces phage phiC31 palindromic operator site
experimental
CGTACTCACGTGAGTAG
Streptomyces phage phiC31
CIR12
operator
Streptomyces phage phiC31 palindromic operator site
experimental
CCTACTCACGTGAGTAG
Streptomyces phage phiC31
lp2
promoter
Streptomyces phage phiC31 late promoter
predicted
GGTTGCCGACTCCCTTC
Streptomyces phage phiC31
CIR9
operator
Streptomyces phage phiC31 palindromic operator site
experimental
CCTACTCACGTGAGTAG
Streptomyces phage phiC31
Ep_k
promoter
Streptomyces phage phiC31 early promoter
experimental
Primer extension
Promoter probe vectors
S1 mapping
TCAGGTTGCCGACTCCCTTCA
Streptomyces phage phiC31
CIR1
operator
Streptomyces phage phiC31 palindromic operator site
experimental
CCTACTCACGTGAGTAG
Streptomyces phage phiC31
cp1
promoter
Streptomyces phage phiC31 immediate early promoter
predicted
TAGGGTGAGCG
-10
TAGGGT
+1
G
Streptomyces phage phiC31
CIR2
operator
Streptomyces phage phiC31 palindromic operator site
experimental
CCTACTCACGTGAGTAG
Streptomyces phage phiC31
cp2
promoter
Streptomyces phage phiC31 immediate early promoter
experimental
Promoter probe vectors
S1 mapping
TAGAGTCGGCTACG
-10
TAGAGT
+1
G
Streptomyces phage phiC31
Ep_a
promoter
Streptomyces phage phiC31 early promoter
experimental
Promoter probe vectors
S1 mapping
CCGGGTTGCCCACTGCCTTCA
Streptomyces phage phiC31
Ep_b
promoter
Streptomyces phage phiC31 early promoter
experimental
Promoter probe vectors
S1 mapping
GCGGGTTGCCGACTCCCTTAC
Streptomyces phage phiC31
Ep_c
promoter
Streptomyces phage phiC31 early promoter
experimental
Promoter probe vectors
S1 mapping
CCGGGTTGCCGACGTCCTTCA
Streptomyces phage phiC31
etB
terminator
Streptomyces phage phiC31 rho-independent transcriptional terminator
experimental
GACACACGCCCCGGGCGGAGCAATGCGCTTCGTGCCGGGGCTTGTC
stem_1
GACACACGCCCCGGGCGGAGC
stem_2
GCTTCGTGCCGGGGCTTGTC
Streptomyces phage phiC31
CIR3
operator
Streptomyces phage phiC31 palindromic operator site
experimental
CGTACTCACGTGAGTAG
Streptomyces phage phiC31
Ep_d
promoter
Streptomyces phage phiC31 early promoter
experimental
Primer extension
Promoter probe vectors
S1 mapping
CCGGGTTGCCGACTCCCTTAC
Streptomyces phage phiC31
etC
terminator
Streptomyces rho-independent transcriptional terminator
experimental
CCTAGGCGCCCTCAACCTACTCACGTGAGTAGCTTGGGGGCGCTTCGG
stem_1
CCTAGGCGCCCTCAACCTACTC
stem_2
GAGTAGCTTGGGGGCGCTTCGG
Streptomyces phage phiC31
CIR4
operator
Streptomyces phage phiC31 palindromic operator site
experimental
CCTACTCACGTGAGTAG
Streptomyces phage phiC31
Ep_e
promoter
Streptomyces phage phiC31 early promoter
experimental
Primer extension
Promoter probe vectors
S1 mapping
CCGGGTTGCCGACTCCCTTAC
Streptomyces phage phiC31
CIR5
operator
Streptomyces phage phiC31 palindromic operator site
experimental
CCTACTCACGTGAGTAG
Streptomyces phage phiC31
etA
terminator
Streptomyces phage phiC31 rho-independent transcriptional terminator
experimental
TGACACCCCACCTAAGCCCCGTTACCGATGAACCTTCGGTAACGGGGCTTCTGTCA
stem_1
TGACACCCCACCTAAGCCCCGTTACCGA
stem_2
TCGGTAACGGGGCTTCTGTCA
Streptomyces phage phiC31
CIR6
operator
Streptomyces phage phiC31 palindromic operator site
experimental
CCTACTCACGTGAGTAG
Streptomyces phage phiC31
ap1
promoter
Streptomyces phage phiC31 immediate early promoter
experimental
DNase1 footprinting
EMSA - gel shift
Primer extension
Promoter probe vectors
TACGTTCGTTGAG
-10
TACGTT
+1
G
Streptomyces phage phiC31
Ep_f
promoter
Streptomyces phage phiC31 early promoter
experimental
Primer extension
Promoter probe vectors
S1 mapping
CCGGGTTGCCGACTTCCTTAC
Streptomyces phage phiC31
Ep_h
promoter
Streptomyces phage phiC31 early promoter
experimental
DNase1 footprinting
Primer extension
Promoter probe vectors
S1 mapping
CCGGGTTGCCGACTTCCTTAC
Streptomyces phage phiC31
CIR16
operator
Streptomyces phage phiC31 palindromic operator site
experimental
CCTACTGAGCCGAAGG
Streptomyces phage phiC31
CIR13
operator
Streptomyces phage phiC31 palindromic operator site
experimental
CCTACTCACGTGAGTAG
Streptomyces phage phiC31
CIR14
operator
Streptomyces phage phiC31 palindromic operator site
experimental
CCTACTCACGTGAGTAG
Streptomyces phage phiC31
CIR15
operator
Streptomyces phage phiC31 palindromic operator site
experimental
CCTACTCACGTGAGTAG
Streptomyces phage phiC31
Ep_j
promoter
Streptomyces phage phiC31 early promoter
experimental
CCGGGTTGCCGACTCCCTTAC
Streptomyces phage phiC31
Pint
promoter
Streptomyces phage phiC31 early promoter
experimental
Promoter probe vectors
S1 mapping
CTGGCTCGCCCACTGCCTTCA
Streptomyces phage phiC31
attP
att site
Streptomyces phage phiC31 attachment site
experimental
GTTTTCCCAGGTCAGAAGCGGTTTTCGGGAGTAGTGCCCCAACTGGGGTAACCTTTGAGTTCTCTCAGTTGGGGGCGTAGGGTCGCCGACATGACACAAGGGGTTGTGACCGGGGT
Streptomyces phage phiC31
lp1
promoter
Streptomyces phage phiC31 late promoter
experimental
Primer extension
Promoter probe vectors
S1 mapping
TCAGGTTGCCGACAACCTTCA
Streptomyces phage phiC31
CIR7
operator
Streptomyces phage phiC31 palindromic operator site
experimental
CCTACTCACGTGAGTAG
Stx2 converting phage I
OL
operator
Stx2 converting bacteriophage I left operator region
predicted
CAATGATGATTTCATGCCAGATTTTCTAATAGTGTAATATTTTCTTACATCACTGCTTGAAAATGCTTCTTGAATAACAGC
O_1
CAATGATGATTTCATGC
O_2
TGTAATATTTTCTTACA
O_3
GCTTCTTGAATAACAGC
Stx2 converting phage I
pL
promoter
Stx2 converting bacteriophage I pL promoter
predicted
tgataatcttttagaccgtactttagtagtaac
-10
CAATGA
-35
ATAGT
Stx2 converting phage I
OR
operator
Stx2 converting bacteriophage I right operator region
predicted
GGGCGAATTCTTTGCGCACTTTTTCATTCTGAACCATGAGTACGATACTAAAGCACTTGCAAAAACTTTCAGTTCAACCATAA
O_1
TTTCAGTTCAACCATAA
O_2
ATGAGTACGATACTAAA
O_3
GGGCGAATTCTTTGCGC
Stx2 converting phage I
pRM
promoter
Stx2 converting bacteriophage I pRM promoter
predicted
gtcttactttttcacgcgtttcttaagcg
-10
GCGAATT
-35
ATTCTG
Stx2 converting phage I
pR
promoter
Stx2 converting bacteriophage I pR promoter
predicted
TTGCAAAAACTTTCAGTTCAACCATAAT
-35
TTGCAA
-10
CATAAT
Stx2 converting phage I
tR
terminator
Putative rho-dependent terminator
predicted
GCCAGCCTCCCCCAGTGGCTGGC
Stx2 converting phage II
pL
promoter
Stx2 converting bacteriophage II pL promoter
predicted
actggttcacttcatgtatagcatgata
-10
ATAGTA
-35
GGTCA
Stx2 converting phage II
OL
operator
Stx2 converting bacteriophage II right operator region
predicted
TAGTACGATATGTACTTCACTTGGTCAATACAATTTGTTCTAAAACGGGGCGTTTTTTTACAACGCTTTGTATTT
O_1
TAGTACGATATGTACTT
O_2
CAATACAATTTGTTCTA
O_3
TACAACGCTTTGTATTT
Stx2 converting phage II
pRM
promoter
Stx2 converting bacteriophage II pRM promoter
predicted
acctaccaaggtcatgtctcgcattattattcctgtact
-35
CATCCA
-10
TCATGTCCTTATTATT
Stx2 converting phage II
OR
operator
Stx2 converting bacteriophage II right operator region
predicted
TATTACGCTCTGTACTGGAACCATCCATGCACAATGTGTATTTTTACTTGTATTTGAGAAGTACATATTGTATTT
O_1
AAGTACATATTGTATTT
O_2
ATGCACAATGTGTATTT
O_3
TATTACGCTCTGTACTG
Stx2 converting phage II
pR
promoter
Stx2 converting bacteriophage II pR promoter
predicted
CTTGTATTTGAGAAGTACATATTGTATTT
-10
ATTT
-35
CTTGTA
Stx2 converting phage II
tR'
terminator
Putative rho-dependent terminator
predicted
GCCAGCCTCCCCCAGTGGCTGGC
Yersinia phage phiYeO3-12
phiOL
promoter
Yersinia phage phiYeO3-12 putative promoter
predicted
CATTAACCCTCACTAAAG
+1
G
Yersinia phage phiYeO3-12
phi1.05
promoter
Yersinia phage phiYeO3-12 putative promoter
predicted
CATTAACCCTCACTAACG
+1
G
Yersinia phage phiYeO3-12
phi1.1
promoter
Yersinia phage phiYeO3-12 putative promoter
predicted
AGTTAACCCTCACTAACG
+1
G
Yersinia phage phiYeO3-12
phi1.3
promoter
Yersinia phage phiYeO3-12 putative promoter
predicted
TAATAACCCTCACTAACA
+1
A
Yersinia phage phiYeO3-12
phi1.5
promoter
Yersinia phage phiYeO3-12 putative promoter
predicted
CATTAACCCTCACTAACA
+1
A
Yersinia phage phiYeO3-12
phi2.5
promoter
Yersinia phage phiYeO3-12 putative promoter
predicted
TAATTACCCTCACTAAAG
+1
G
Yersinia phage phiYeO3-12
phi3.8
promoter
Yersinia phage phiYeO3-12 putative promoter
predicted
AATTAACACTCACTAAAG
+1
G
Yersinia phage phiYeO3-12
phi4.3
promoter
Yersinia phage phiYeO3-12 putative promoter
predicted
AATTAACCCTCACTAACG
+1
G
Yersinia phage phiYeO3-12
phi6.5
promoter
Yersinia phage phiYeO3-12 putative promoter
predicted
TATTAACCCTCACTAAAG
+1
G
Yersinia phage phiYeO3-12
phi9
promoter
Yersinia phage phiYeO3-12 putative promoter
predicted
TAATAACCCTCACTAAAG
+1
G
Yersinia phage phiYeO3-12
phi10
promoter
Yersinia phage phiYeO3-12 putative promoter
predicted
AATTAACCCTCACTAAAG
+1
G
Yersinia phage phiYeO3-12
phi11
promoter
Yersinia phage phiYeO3-12 putative promoter
predicted
CTTTAACCCTCACTAACA
+1
A
Yersinia phage phiYeO3-12
phi13
promoter
Yersinia phage phiYeO3-12 putative promoter
predicted
AATTAACCCTCACTAAAG
+1
G
Yersinia phage phiYeO3-12
phi17
promoter
Yersinia phage phiYeO3-12 putative promoter
predicted
AATAAACCCTCACTAAAG
+1
G
Yersinia phage phiYeO3-12
phiOR
promoter
Yersinia phage phiYeO3-12 putative promoter
predicted
CATTAACCCTCACTAAAG
+1
G