NEWS
phiSITE release 2009.1
24-Jun-2009
31 phages
(28 with complete genome)
703 regulatory sites
(412 experimentally identified)
extracted from 124 publications
phiSITE release 2009.2
22-Jul-2009
31 phages (4 updated)
(28 with complete genome)
706 regulatory sites (128 updated)
(414 experimentally identified)
extracted from 126 publications
phiSITE release 2009.3
14-Aug-2009
32 phages (2 updated)
(29 with complete genome)
714 regulatory sites (13 updated)
(423 experimentally identified)
extracted from 127 publications
phiSITE release 2010.1
07-May-2010
36 phages (5 updated)
(33 with complete genome)
725 regulatory sites (17 updated)
(423 experimentally identified)
extracted from 129 publications
Updated phiSITE interface
phiGENOME 1.0 released
10-Jun-2010
phiSITE release 2010.2
20-Aug-2010
35 phages (5 updated)
(32 with complete genome)
732 regulatory sites (92 updated)
(428 experimentally identified)
extracted from 129 publications
Updated phiSITE interface
phiGENOME 1.1 released
20-Aug-2010
phiSITE release 2010.3
09-Nov-2010
541 phages (503 updated)
(538 with complete genome)
732 regulatory sites
(428 experimentally identified)
extracted from 129 publications
Updated phiSITE interface
phiSITE release 2011.1
28-Jun-2011
542 phages (30 updated)
(539 with complete genome)
732 regulatory sites (1 updated)
(428 experimentally identified)
extracted from 129 publications
phiGENOME 1.3 released
09-Mar-2011
phiGENOME 1.2 released
09-Nov-2010
phiSITE release 2011.2
12-Dec-2011
609 phages (78 updated)
(606 with complete genome)
732 regulatory sites
(428 experimentally identified)
extracted from 129 publications
phiGENOME 1.4 released
01-Jul-2011
phiSITE release 2013.1
17-Apr-2013
927 phages
(923 with complete genome)
732 regulatory sites
(428 experimentally identified)
extracted from 128 publications
phiSITE release 2014.1
18-Mar-2014
1233 phages
(1229 with complete genome)
732 regulatory sites
(428 experimentally identified)
extracted from 128 publications
phiSITE database is a free database service provided by the
Institute of Molecular Biology,
Slovak Academy of Sciences. phiSITE is a collection of phage gene
regulatory elements, genes, genomes and other related information. The data are
collected mainly form scientific papers and cross-referenced with other
database resources. To date it contains more than 700 reglatory elements
from 32 bacteriophages form Siphoviridae, Myoviridae
and Podoviridae families, with particular focus on
experimentally confirmed regulatory sites. phiSITE database is
permanently updated and new releases are published several times a
year
You can explore the data either by searching the database using given
keyword(s) (Search) or by browsing
phage genomes via phiGENOME. You can also browse and export set of
regulatory sequences in several output formats (Browse) and use our
PSSM-convert, Free Energy and Promoter Hunter
tools (Tools). For more
instructions see our Help section.
This project was supported by APVV (Slovak
Research and Development Agency) grant APVT-51-025004 and the VEGA (Scientific Grant Agency of the
Ministry of Education of the Slovak Republic and of Slovak Academy of
Sciences) grant 2/0100/09.
If you find phiSITE useful, please consider citing the references that describe this work:
Klucar, L., Stano, M., Hajduk, M. (2010): phiSITE: Database of Gene Regulation in Bacteriophages.
Nucleic Acids Res. 38(Database Issue): D366-D370.
doi:10.1093/nar/gkp911
Stano, M., Klucar, L. (2011): phiGENOME: An integrative navigation throughout bacteriophage genomes.
Genomics. 98(5):376-80
doi:10.1016/j.ygeno.2011.07.004